openPrimeRui
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see openPrimeRui.
Shiny Application for Multiplex PCR Primer Design and Analysis
Bioconductor version: 3.11
A Shiny application providing methods for designing, evaluating, and comparing primer sets for multiplex polymerase chain reaction. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected.
Author: Matthias Döring [aut, cre], Nico Pfeifer [aut]
Maintainer: Matthias Döring <matthias-doering at gmx.de>
citation("openPrimeRui")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("openPrimeRui")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("openPrimeRui")
openPrimeRui | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Software, Technology |
Version | 1.10.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
License | GPL-2 |
Depends | R (>= 4.0.0), openPrimeR(>= 0.99.0) |
Imports | shiny (>= 1.0.2), shinyjs (>= 0.9), shinyBS (>= 0.61), DT (>= 0.2), rmarkdown (>= 1.0) |
System Requirements | |
URL |
See More
Suggests | knitr (>= 1.13) |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | openPrimeRui_1.10.0.tar.gz |
Windows Binary | openPrimeRui_1.10.0.zip |
macOS 10.13 (High Sierra) | openPrimeRui_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/openPrimeRui |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/openPrimeRui |
Bioc Package Browser | https://code.bioconductor.org/browse/openPrimeRui/ |
Package Short Url | https://bioconductor.org/packages/openPrimeRui/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |