netresponse

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see netresponse.

Functional Network Analysis


Bioconductor version: 3.11

Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.

Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, enter citation("netresponse")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netresponse")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netresponse")
microbiome R package HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphAndNetwork, Microarray, Network, NetworkInference, Software, Transcription
Version 1.48.0
In Bioconductor since BioC 2.7 (R-2.12) (13.5 years)
License GPL (>=2)
Depends R (>= 2.15.1), Rgraphviz, methods, minet, mclust, reshape2
Imports dmt, ggplot2, graph, igraph, parallel, plyr, qvalue, RColorBrewer
System Requirements
URL https://github.com/antagomir/netresponse
Bug Reports https://github.com/antagomir/netresponse/issues
See More
Suggests knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package netresponse_1.48.0.tar.gz
Windows Binary netresponse_1.48.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) netresponse_1.48.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/netresponse
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netresponse
Bioc Package Browser https://code.bioconductor.org/browse/netresponse/
Package Short Url https://bioconductor.org/packages/netresponse/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive