microbiomeDASim
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see microbiomeDASim.
Microbiome Differential Abundance Simulation
Bioconductor version: 3.11
A toolkit for simulating differential microbiome data designed for longitudinal analyses. Several functional forms may be specified for the mean trend. Observations are drawn from a multivariate normal model. The objective of this package is to be able to simulate data in order to accurately compare different longitudinal methods for differential abundance.
Author: Justin Williams, Hector Corrada Bravo, Jennifer Tom, Joseph Nathaniel Paulson
Maintainer: Justin Williams <williazo at ucla.edu>
citation("microbiomeDASim")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("microbiomeDASim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("microbiomeDASim")| microbiomeDASim | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Microbiome, Software, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6.0) |
| Imports | graphics, ggplot2, MASS, tmvtnorm, Matrix, mvtnorm, pbapply, stats, phyloseq, metagenomeSeq, Biobase |
| System Requirements | |
| URL | https://github.com/williazo/microbiomeDASim |
| Bug Reports | https://github.com/williazo/microbiomeDASim/issues |
See More
| Suggests | testthat (>= 2.1.0), knitr, devtools |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | microbiomeDASim_1.2.0.tar.gz |
| Windows Binary | microbiomeDASim_1.2.0.zip |
| macOS 10.13 (High Sierra) | microbiomeDASim_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/microbiomeDASim |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/microbiomeDASim |
| Bioc Package Browser | https://code.bioconductor.org/browse/microbiomeDASim/ |
| Package Short Url | https://bioconductor.org/packages/microbiomeDASim/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |