methylMnM

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see methylMnM.

detect different methylation level (DMR)


Bioconductor version: 3.11

To give the exactly p-value and q-value of MeDIP-seq and MRE-seq data for different samples comparation.

Author: Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang

Maintainer: Yan Zhou<zhouy1016 at 163.com>

Citation (from within R, enter citation("methylMnM")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methylMnM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylMnM")
methylMnM PDF R Script
Reference Manual PDF

Details

biocViews DNAMethylation, Sequencing, Software
Version 1.26.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-3
Depends R (>= 2.12.1), edgeR, statmod
Imports
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me SIMD
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methylMnM_1.26.0.tar.gz
Windows Binary methylMnM_1.26.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) methylMnM_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/methylMnM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methylMnM
Bioc Package Browser https://code.bioconductor.org/browse/methylMnM/
Package Short Url https://bioconductor.org/packages/methylMnM/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive