metaMS
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see metaMS.
MS-based metabolomics annotation pipeline
Bioconductor version: 3.11
MS-based metabolomics data processing and compound annotation pipeline.
Author: Ron Wehrens [aut, cre] (author of GC-MS part), Pietro Franceschi [aut] (author of LC-MS part), Nir Shahaf [ctb], Matthias Scholz [ctb], Georg Weingart [ctb] (development of GC-MS approach), Elisabete Carvalho [ctb] (testing and feedback of GC-MS pipeline)
Maintainer: Yann Guitton <yann.guitton at gmail.com>
citation("metaMS")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("metaMS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metaMS")
runGC | R Script | |
runLC | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ImmunoOncology, MassSpectrometry, Metabolomics, Software |
Version | 1.24.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
License | GPL (>= 2) |
Depends | R (>= 2.10), methods, CAMERA, xcms(>= 1.35) |
Imports | Matrix, tools, robustbase, BiocGenerics |
System Requirements | |
URL | https://github.com/yguitton/metaMS |
See More
Suggests | metaMSdata, RUnit |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | CluMSID |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | metaMS_1.24.0.tar.gz |
Windows Binary | metaMS_1.24.0.zip |
macOS 10.13 (High Sierra) | metaMS_1.24.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/metaMS |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/metaMS |
Bioc Package Browser | https://code.bioconductor.org/browse/metaMS/ |
Package Short Url | https://bioconductor.org/packages/metaMS/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |