maser
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see maser.
Mapping Alternative Splicing Events to pRoteins
Bioconductor version: 3.11
This package provides functionalities for downstream analysis, annotation and visualizaton of alternative splicing events generated by rMATS.
Author: Diogo F.T. Veiga [aut, cre]
Maintainer: Diogo F.T. Veiga <diogof.veiga at gmail.com>
Citation (from within R, enter
citation("maser")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("maser")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("maser")
Introduction | HTML | R Script |
Mapping protein features to splicing events | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | AlternativeSplicing, Software, Transcriptomics, Visualization |
Version | 1.6.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.5.0), ggplot2, GenomicRanges |
Imports | dplyr, rtracklayer, reshape2, Gviz, DT, GenomeInfoDb, stats, utils, IRanges, methods, BiocGenerics, parallel, data.table |
System Requirements | |
URL | https://github.com/DiogoVeiga/maser |
Bug Reports | https://github.com/DiogoVeiga/maser/issues |
See More
Suggests | testthat, knitr, rmarkdown, BiocStyle, AnnotationHub |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | maser_1.6.0.tar.gz |
Windows Binary | maser_1.6.0.zip |
macOS 10.13 (High Sierra) | maser_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/maser |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/maser |
Bioc Package Browser | https://code.bioconductor.org/browse/maser/ |
Package Short Url | https://bioconductor.org/packages/maser/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |