manta

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see manta.

Microbial Assemblage Normalized Transcript Analysis


Bioconductor version: 3.11

Tools for robust comparative metatranscriptomics.

Author: Ginger Armbrust, Adrian Marchetti

Maintainer: Chris Berthiaume <chrisbee at uw.edu>, Adrian Marchetti <amarchetti at unc.edu>

Citation (from within R, enter citation("manta")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("manta")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataImport, DifferentialExpression, GeneExpression, Genetics, ImmunoOncology, QualityControl, RNASeq, Sequencing, Software, Visualization
Version 1.34.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License Artistic-2.0
Depends R (>= 1.8.0), methods, edgeR(>= 2.5.13)
Imports Hmisc, caroline (>= 0.6.6)
System Requirements
URL http://manta.ocean.washington.edu/
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Suggests RSQLite, plotrix
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/manta
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/manta
Package Short Url https://bioconductor.org/packages/manta/
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Old Source Packages for BioC 3.11 Source Archive