keggorthology
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see keggorthology.
graph support for KO, KEGG Orthology
Bioconductor version: 3.11
graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
citation("keggorthology")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("keggorthology")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("keggorthology")| keggorthology overview | R Script | |
| Reference Manual |
Details
| biocViews | GraphAndNetwork, KEGG, Pathways, Software, Visualization |
| Version | 2.40.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (14 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.5.0), stats, graph, hgu95av2.db |
| Imports | AnnotationDbi, graph, DBI, graph, grDevices, methods, stats, tools, utils |
| System Requirements | |
| URL |
See More
| Suggests | RBGL, ALL |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MLInterfaces |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | keggorthology_2.40.0.tar.gz |
| Windows Binary | keggorthology_2.40.0.zip |
| macOS 10.13 (High Sierra) | keggorthology_2.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/keggorthology |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/keggorthology |
| Bioc Package Browser | https://code.bioconductor.org/browse/keggorthology/ |
| Package Short Url | https://bioconductor.org/packages/keggorthology/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |