iCOBRA
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see iCOBRA.
Comparison and Visualization of Ranking and Assignment Methods
Bioconductor version: 3.11
This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. It also contains a shiny application for interactive exploration of results.
Author: Charlotte Soneson [aut, cre] 
Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>
citation("iCOBRA")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iCOBRA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iCOBRA")| iCOBRA User Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.4) |
| Imports | shiny (>= 0.9.1.9008), shinydashboard, shinyBS, reshape2, ggplot2 (>= 2.0.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR |
| System Requirements | |
| URL | https://github.com/markrobinsonuzh/iCOBRA |
| Bug Reports | https://github.com/markrobinsonuzh/iCOBRA/issues |
See More
| Suggests | knitr, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | muscat, SummarizedBenchmark |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iCOBRA_1.16.0.tar.gz |
| Windows Binary | iCOBRA_1.16.0.zip |
| macOS 10.13 (High Sierra) | iCOBRA_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iCOBRA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iCOBRA |
| Bioc Package Browser | https://code.bioconductor.org/browse/iCOBRA/ |
| Package Short Url | https://bioconductor.org/packages/iCOBRA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |