hypeR
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see hypeR.
Hyper Enrichment
Bioconductor version: 3.11
An R Package for Geneset Enrichment Workflows.
Author: Anthony Federico [aut, cre], Stefano Monti [aut]
Maintainer: Anthony Federico <anfed at bu.edu>
Citation (from within R, enter
citation("hypeR")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("hypeR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("hypeR")| hypeR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Annotation, GeneSetEnrichment, Pathways, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.6.0) |
| Imports | ggplot2, ggforce, R6, magrittr, dplyr, purrr, stats, stringr, scales, rlang, httr, openxlsx, reactable, msigdbr, kableExtra, rmarkdown, igraph, visNetwork |
| System Requirements | |
| URL | https://github.com/montilab/hypeR |
| Bug Reports | https://github.com/montilab/hypeR/issues |
See More
| Suggests | devtools, testthat, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | hypeR_1.4.0.tar.gz |
| Windows Binary | hypeR_1.4.0.zip |
| macOS 10.13 (High Sierra) | hypeR_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/hypeR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/hypeR |
| Bioc Package Browser | https://code.bioconductor.org/browse/hypeR/ |
| Package Short Url | https://bioconductor.org/packages/hypeR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |