hmdbQuery

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see hmdbQuery.

utilities for exploration of human metabolome database


Bioconductor version: 3.11

Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("hmdbQuery")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("hmdbQuery")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("hmdbQuery")
hmdbQuery: working with Human Metabolome Database (hmdb.ca) HTML R Script
Reference Manual PDF

Details

biocViews Infrastructure, Metabolomics, Software
Version 1.8.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5), XML
Imports S4Vectors, methods, utils
System Requirements
URL
See More
Suggests knitr, annotate, gwascat, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package hmdbQuery_1.8.0.tar.gz
Windows Binary hmdbQuery_1.8.0.zip
macOS 10.13 (High Sierra) hmdbQuery_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/hmdbQuery
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hmdbQuery
Bioc Package Browser https://code.bioconductor.org/browse/hmdbQuery/
Package Short Url https://bioconductor.org/packages/hmdbQuery/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive