graper
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see graper.
Adaptive penalization in high-dimensional regression and classification with external covariates using variational Bayes
Bioconductor version: 3.11
This package enables regression and classification on high-dimensional data with different relative strengths of penalization for different feature groups, such as different assays or omic types. The optimal relative strengths are chosen adaptively. Optimisation is performed using a variational Bayes approach.
Author: Britta Velten [aut, cre], Wolfgang Huber [aut]
Maintainer: Britta Velten <britta.velten at gmail.com>
citation("graper")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("graper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("graper")
example_linear | HTML | R Script |
example_logistic | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Bayesian, Classification, Regression, Software |
Version | 1.4.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
License | GPL (>= 2) |
Depends | R (>= 3.6) |
Imports | Matrix, Rcpp, stats, ggplot2, methods, cowplot, matrixStats |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown, BiocStyle, testthat |
Linking To | Rcpp, RcppArmadillo, BH |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | graper_1.4.0.tar.gz |
Windows Binary | graper_1.4.0.zip (32- & 64-bit) |
macOS 10.13 (High Sierra) | graper_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/graper |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/graper |
Bioc Package Browser | https://code.bioconductor.org/browse/graper/ |
Package Short Url | https://bioconductor.org/packages/graper/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |