gcrma
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see gcrma.
Background Adjustment Using Sequence Information
Bioconductor version: 3.11
Background adjustment using sequence information
Author: Jean(ZHIJIN) Wu, Rafael Irizarry with contributions from James MacDonald <jmacdon at med.umich.edu> Jeff Gentry
Maintainer: Z. Wu <zwu at stat.brown.edu>
Citation (from within R, enter
citation("gcrma")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gcrma")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gcrma")
gcrma1.2 | |
Reference Manual | |
NEWS | Text |
Details
biocViews | Microarray, OneChannel, Preprocessing, Software |
Version | 2.60.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
License | LGPL |
Depends | R (>= 2.6.0), affy(>= 1.23.2), graphics, methods, stats, utils |
Imports | Biobase, affy(>= 1.23.2), affyio(>= 1.13.3), XVector, Biostrings(>= 2.11.32), splines, BiocManager |
System Requirements | |
URL |
See More
Suggests | affydata, tools, splines, hgu95av2cdf, hgu95av2probe |
Linking To | |
Enhances | |
Depends On Me | affyILM, affyPLM, bgx, maPredictDSC, maskBAD, simpleaffy, webbioc |
Imports Me | affycoretools, affylmGUI, simpleaffy |
Suggests Me | AffyExpress, ArrayTools, BiocCaseStudies, panp |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | gcrma_2.60.0.tar.gz |
Windows Binary | gcrma_2.60.0.zip (32- & 64-bit) |
macOS 10.13 (High Sierra) | gcrma_2.60.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/gcrma |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gcrma |
Bioc Package Browser | https://code.bioconductor.org/browse/gcrma/ |
Package Short Url | https://bioconductor.org/packages/gcrma/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |