focalCall

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see focalCall.

Detection of focal aberrations in DNA copy number data


Bioconductor version: 3.11

Detection of genomic focal aberrations in high-resolution DNA copy number data

Author: Oscar Krijgsman

Maintainer: Oscar Krijgsman <oscarkrijgsman at gmail.com>

Citation (from within R, enter citation("focalCall")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("focalCall")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("focalCall")
focalCall PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Microarray, Preprocessing, Sequencing, Software, Visualization
Version 1.21.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-2
Depends R (>= 2.10.0), CGHcall
Imports
System Requirements
URL https://github.com/OscarKrijgsman/focalCall
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Suggests RUnit, BiocGenerics
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package focalCall_1.21.0.tar.gz
Windows Binary focalCall_1.21.0.zip
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/focalCall
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/focalCall
Bioc Package Browser https://code.bioconductor.org/browse/focalCall/
Package Short Url https://bioconductor.org/packages/focalCall/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive