epigenomix
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see epigenomix.
Epigenetic and gene transcription data normalization and integration with mixture models
Bioconductor version: 3.11
A package for the integrative analysis of RNA-seq or microarray based gene transcription and histone modification data obtained by ChIP-seq. The package provides methods for data preprocessing and matching as well as methods for fitting bayesian mixture models in order to detect genes with differences in both data types.
Author: Hans-Ulrich Klein, Martin Schaefer
Maintainer: Hans-Ulrich Klein <h.klein at uni-muenster.de>
citation("epigenomix")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epigenomix")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epigenomix")
epigenomix package vignette | R Script | |
Reference Manual |
Details
biocViews | ChIPSeq, Classification, DifferentialExpression, GeneExpression, Software |
Version | 1.28.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
License | LGPL-3 |
Depends | R (>= 3.2.0), methods, Biobase, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment |
Imports | BiocGenerics, MCMCpack, Rsamtools, parallel, GenomeInfoDb, beadarray |
System Requirements | |
URL |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | epigenomix_1.28.0.tar.gz |
Windows Binary | epigenomix_1.28.0.zip |
macOS 10.13 (High Sierra) | epigenomix_1.28.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/epigenomix |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epigenomix |
Bioc Package Browser | https://code.bioconductor.org/browse/epigenomix/ |
Package Short Url | https://bioconductor.org/packages/epigenomix/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |