breakpointR
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see breakpointR.
Find breakpoints in Strand-seq data
Bioconductor version: 3.11
This package implements functions for finding breakpoints, plotting and export of Strand-seq data.
Author: David Porubsky, Ashley Sanders, Aaron Taudt
Maintainer: David Porubsky <david.porubsky at gmail.com>
Citation (from within R, enter
citation("breakpointR")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("breakpointR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("breakpointR")
How to use breakpointR | R Script | |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Coverage, DNASeq, Sequencing, SingleCell, Software |
Version | 1.6.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
License | file LICENSE |
Depends | R (>= 3.6), GenomicRanges, cowplot, breakpointRdata |
Imports | methods, utils, grDevices, stats, S4Vectors, GenomeInfoDb(>= 1.12.3), IRanges, Rsamtools, GenomicAlignments, ggplot2, BiocGenerics, gtools, doParallel, foreach |
System Requirements | |
URL | https://github.com/daewoooo/BreakPointR |
See More
Suggests | knitr, BiocStyle, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | breakpointR_1.6.0.tar.gz |
Windows Binary | breakpointR_1.6.0.zip |
macOS 10.13 (High Sierra) | breakpointR_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/breakpointR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/breakpointR |
Bioc Package Browser | https://code.bioconductor.org/browse/breakpointR/ |
Package Short Url | https://bioconductor.org/packages/breakpointR/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |