biomvRCNS
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see biomvRCNS.
Copy Number study and Segmentation for multivariate biological data
Bioconductor version: 3.11
In this package, a Hidden Semi Markov Model (HSMM) and one homogeneous segmentation model are designed and implemented for segmentation genomic data, with the aim of assisting in transcripts detection using high throughput technology like RNA-seq or tiling array, and copy number analysis using aCGH or sequencing.
Author: Yang Du
Maintainer: Yang Du <tooyoung at gmail.com>
citation("biomvRCNS")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("biomvRCNS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biomvRCNS")| biomvRCNS package introduction | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CopyNumberVariation, Genetics, Microarray, Sequencing, Software, Visualization, aCGH |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
| License | GPL (>= 2) |
| Depends | IRanges, GenomicRanges, Gviz |
| Imports | methods, mvtnorm |
| System Requirements | |
| URL |
See More
| Suggests | cluster, parallel, GenomicFeatures, dynamicTreeCut, Rsamtools, TxDb.Hsapiens.UCSC.hg19.knownGene |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | biomvRCNS_1.28.0.tar.gz |
| Windows Binary | biomvRCNS_1.28.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | biomvRCNS_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/biomvRCNS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biomvRCNS |
| Bioc Package Browser | https://code.bioconductor.org/browse/biomvRCNS/ |
| Package Short Url | https://bioconductor.org/packages/biomvRCNS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |