bayNorm
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see bayNorm.
Single-cell RNA sequencing data normalization
Bioconductor version: 3.11
bayNorm is used for normalizing single-cell RNA-seq data.
Author: Wenhao Tang [aut, cre], Fran<U+00E7>ois Bertaux [aut], Philipp Thomas [aut], Claire Stefanelli [aut], Malika Saint [aut], Samuel Marguerat [aut], Vahid Shahrezaei [aut]
Maintainer: Wenhao Tang <wt215 at ic.ac.uk>
citation("bayNorm")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bayNorm")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bayNorm")
Introduction to bayNorm | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ImmunoOncology, Normalization, RNASeq, Sequencing, SingleCell, Software |
Version | 1.6.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
License | GPL (>= 2) |
Depends | R (>= 3.5) |
Imports | Rcpp (>= 0.12.12), BB, foreach, iterators, doSNOW, Matrix, parallel, MASS, locfit, fitdistrplus, stats, methods, graphics, grDevices, SingleCellExperiment, SummarizedExperiment, BiocParallel, utils |
System Requirements | |
URL | https://github.com/WT215/bayNorm |
Bug Reports | https://github.com/WT215/bayNorm/issues |
See More
Suggests | knitr, rmarkdown, BiocStyle, devtools, testthat |
Linking To | Rcpp, RcppArmadillo, RcppProgress |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | bayNorm_1.6.0.tar.gz |
Windows Binary | bayNorm_1.6.0.zip (32- & 64-bit) |
macOS 10.13 (High Sierra) | bayNorm_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/bayNorm |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bayNorm |
Bioc Package Browser | https://code.bioconductor.org/browse/bayNorm/ |
Package Short Url | https://bioconductor.org/packages/bayNorm/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |