basilisk

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see basilisk.

Freezing Python Versions Inside Bioconductor Packages


Bioconductor version: 3.11

Installs a self-contained Python instance that is managed by the R installation. This aims to provide a consistent Python version that can be used reliably by Bioconductor packages. Module versions are also controlled to guarantee consistent behavior on different user systems.

Author: Aaron Lun [aut, cre, cph], Vince Carey [ctb]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("basilisk")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("basilisk")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("basilisk")
Motivation HTML R Script
Reference Manual PDF

Details

biocViews Infrastructure, Software
Version 1.0.2
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License GPL-3
Depends
Imports reticulate, parallel, methods, basilisk.utils
System Requirements
URL
See More
Suggests knitr, rmarkdown, BiocStyle, testthat, callr
Linking To
Enhances
Depends On Me
Imports Me BiocSklearn
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package basilisk_1.0.2.tar.gz
Windows Binary basilisk_1.0.2.zip
macOS 10.13 (High Sierra) basilisk_1.0.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/basilisk
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/basilisk
Bioc Package Browser https://code.bioconductor.org/browse/basilisk/
Package Short Url https://bioconductor.org/packages/basilisk/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive