TurboNorm
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see TurboNorm.
A fast scatterplot smoother suitable for microarray normalization
Bioconductor version: 3.11
A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.
Author: Maarten van Iterson and Chantal van Leeuwen
Maintainer: Maarten van Iterson <mviterson at gmail.com>
citation("TurboNorm")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TurboNorm")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TurboNorm")
TurboNorm Overview | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CpGIsland, DNAMethylation, MethylationArray, Microarray, Normalization, OneChannel, Preprocessing, Software, TwoChannel |
Version | 1.36.0 |
In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
License | LGPL |
Depends | R (>= 2.12.0), convert, limma(>= 1.7.0), marray |
Imports | stats, grDevices, affy, lattice |
System Requirements | |
URL | http://www.humgen.nl/MicroarrayAnalysisGroup.html |
See More
Suggests | BiocStyle, affydata |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TurboNorm_1.36.0.tar.gz |
Windows Binary | TurboNorm_1.36.0.zip (32- & 64-bit) |
macOS 10.13 (High Sierra) | TurboNorm_1.36.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TurboNorm |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TurboNorm |
Bioc Package Browser | https://code.bioconductor.org/browse/TurboNorm/ |
Package Short Url | https://bioconductor.org/packages/TurboNorm/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |