TreeSummarizedExperiment

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see TreeSummarizedExperiment.

TreeSummarizedExperiment: a S4 Class for Data with Tree Structures


Bioconductor version: 3.11

TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data.

Author: Ruizhu Huang [aut, cre] , Felix G.M. Ernst [ctb]

Maintainer: Ruizhu Huang <ruizhuRH at gmail.com>

Citation (from within R, enter citation("TreeSummarizedExperiment")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TreeSummarizedExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TreeSummarizedExperiment")
Introduction to TreeSE HTML R Script
Reference Manual PDF

Details

biocViews DataRepresentation, Infrastructure, Software
Version 1.4.8
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL (>=2)
Depends R (>= 3.6.0), SingleCellExperiment, S4Vectors(>= 0.23.18)
Imports methods, BiocGenerics, utils, ape, rlang, dplyr, SummarizedExperiment
System Requirements
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Suggests ggtree, ggplot2, BiocStyle, knitr, rmarkdown, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TreeSummarizedExperiment_1.4.8.tar.gz
Windows Binary TreeSummarizedExperiment_1.4.8.zip
macOS 10.13 (High Sierra) TreeSummarizedExperiment_1.4.8.tgz
Source Repository git clone https://git.bioconductor.org/packages/TreeSummarizedExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TreeSummarizedExperiment
Bioc Package Browser https://code.bioconductor.org/browse/TreeSummarizedExperiment/
Package Short Url https://bioconductor.org/packages/TreeSummarizedExperiment/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive