TPP2D
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see TPP2D.
Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)
Bioconductor version: 3.11
Detection of ligand-protein interactions from 2D thermal profiles (DLPTP), Performs an FDR-controlled analysis of 2D-TPP experiments by functional analysis of dose-response curves across temperatures.
Author: Nils Kurzawa [aut, cre], Holger Franken [aut], Simon Anders [aut], Wolfgang Huber [aut], Mikhail M. Savitski [aut]
Maintainer: Nils Kurzawa <nils.kurzawa at embl.de>
citation("TPP2D")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TPP2D")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TPP2D")| Introduction to TPP2D for 2D-TPP analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Proteomics, Software |
| Version | 1.4.1 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6.0), stats, utils, dplyr, methods |
| Imports | ggplot2, tidyr, foreach, doParallel, openxlsx, stringr, RCurl, parallel, MASS, BiocParallel, limma |
| System Requirements | |
| URL | http://bioconductor.org/packages/TPP2D |
| Bug Reports | https://support.bioconductor.org/ |
See More
| Suggests | knitr, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TPP2D_1.4.1.tar.gz |
| Windows Binary | TPP2D_1.4.1.zip |
| macOS 10.13 (High Sierra) | TPP2D_1.4.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TPP2D |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TPP2D |
| Bioc Package Browser | https://code.bioconductor.org/browse/TPP2D/ |
| Package Short Url | https://bioconductor.org/packages/TPP2D/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |