TNBC.CMS
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see TNBC.CMS.
TNBC.CMS: Prediction of TNBC Consensus Molecular Subtypes
Bioconductor version: 3.11
This package implements a machine learning-based classifier for the assignment of consensus molecular subtypes to TNBC samples. It also provides functions to summarize genomic and clinical characteristics.
Author: Doyeong Yu, Jihyun Kim, In Hae Park, Charny Park
Maintainer: Doyeong Yu <parklab.bi at gmail.com>
citation("TNBC.CMS")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TNBC.CMS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TNBC.CMS")
TNBC.CMS.pdf | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Classification, Clustering, GeneExpression, GenePrediction, Software, SupportVectorMachine |
Version | 1.4.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (5 years) |
License | GPL-3 |
Depends | R (>= 3.6.0), e1071, quadprog, SummarizedExperiment |
Imports | GSVA(>= 1.26.0), pheatmap, grDevices, RColorBrewer, pracma, GGally, R.utils, forestplot, ggplot2, ggpubr, survival, grid, stats, methods |
System Requirements | |
URL |
See More
Suggests | knitr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TNBC.CMS_1.4.0.tar.gz |
Windows Binary | TNBC.CMS_1.4.0.zip |
macOS 10.13 (High Sierra) | TNBC.CMS_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TNBC.CMS |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TNBC.CMS |
Bioc Package Browser | https://code.bioconductor.org/browse/TNBC.CMS/ |
Package Short Url | https://bioconductor.org/packages/TNBC.CMS/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |