TFutils
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see TFutils.
TFutils
Bioconductor version: 3.11
Package to work with TF metadata from various sources.
Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]
Maintainer: Shweta Gopaulakrishnan <reshg at channing.harvard.edu>
Citation (from within R, enter
citation("TFutils")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TFutils")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TFutils")| A note on fimo16 | HTML | R Script |
| TFutils -- representing TFBS and TF target sets | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software, Transcriptomics |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0) |
| Imports | methods, dplyr, magrittr, miniUI, shiny, Rsamtools, GSEABase |
| System Requirements | |
| URL |
See More
| Suggests | knitr, data.table, testthat, AnnotationDbi, AnnotationFilter, Biobase, GenomicFeatures, GenomicRanges, Gviz, IRanges, Rsamtools, S4Vectors, org.Hs.eg.db, EnsDb.Hsapiens.v75, BiocParallel, BiocStyle, GO.db, GenomicFiles, GenomeInfoDb, SummarizedExperiment, UpSetR, ggplot2, png, gwascat, MotifDb, motifStack, RColorBrewer |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | TxRegInfra |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TFutils_1.8.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | TFutils_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TFutils |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TFutils |
| Bioc Package Browser | https://code.bioconductor.org/browse/TFutils/ |
| Package Short Url | https://bioconductor.org/packages/TFutils/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |