TFARM
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see TFARM.
Transcription Factors Association Rules Miner
Bioconductor version: 3.11
It searches for relevant associations of transcription factors with a transcription factor target, in specific genomic regions. It also allows to evaluate the Importance Index distribution of transcription factors (and combinations of transcription factors) in association rules.
Author: Liuba Nausicaa Martino, Alice Parodi, Gaia Ceddia, Piercesare Secchi, Stefano Campaner, Marco Masseroli
Maintainer: Liuba Nausicaa Martino <liuban.martino at gmail.com>
citation("TFARM")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TFARM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TFARM")
Transcription Factor Association Rule Miner | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | BiologicalQuestion, Infrastructure, Software, StatisticalMethod, Transcription |
Version | 1.10.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4) |
Imports | arules, fields, GenomicRanges, graphics, stringr, methods, stats, gplots |
System Requirements | |
URL |
See More
Suggests | BiocStyle, knitr, plyr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TFARM_1.10.0.tar.gz |
Windows Binary | TFARM_1.10.0.zip |
macOS 10.13 (High Sierra) | TFARM_1.10.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TFARM |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TFARM |
Bioc Package Browser | https://code.bioconductor.org/browse/TFARM/ |
Package Short Url | https://bioconductor.org/packages/TFARM/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |