SIMAT
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see SIMAT.
GC-SIM-MS data processing and alaysis tool
Bioconductor version: 3.11
This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.
Author: M. R. Nezami Ranjbar <nranjbar at vt.edu>
Maintainer: M. R. Nezami Ranjbar <nranjbar at vt.edu>
citation("SIMAT")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SIMAT")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SIMAT")| SIMAT Usage | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology, MassSpectrometry, Metabolomics, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | GPL-2 |
| Depends | R (>= 3.5.0), Rcpp (>= 0.11.3) |
| Imports | mzR, ggplot2, grid, reshape2, grDevices, stats, utils |
| System Requirements | |
| URL | http://omics.georgetown.edu/SIMAT.html |
See More
| Suggests | RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SIMAT_1.20.0.tar.gz |
| Windows Binary | SIMAT_1.20.0.zip |
| macOS 10.13 (High Sierra) | SIMAT_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SIMAT |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SIMAT |
| Bioc Package Browser | https://code.bioconductor.org/browse/SIMAT/ |
| Package Short Url | https://bioconductor.org/packages/SIMAT/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |