PloGO2

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see PloGO2.

Plot Gene Ontology and KEGG pathway Annotation and Abundance


Bioconductor version: 3.11

Functions for enrichment analysis and plotting gene ontology or KEGG pathway information for multiple data subsets at the same time. It also enables encorporating multiple conditions and abundance data.

Author: Dana Pascovici, Jemma Wu

Maintainer: Jemma Wu <jemma.wu at mq.edu.au>, Dana Pascovici <dana.pascovici at mq.edu.au>

Citation (from within R, enter citation("PloGO2")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PloGO2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PloGO2")
PloGO2_vignette.pdf PDF R Script
PloGO2_with_WGNCA_vignette.pdf PDF R Script
Reference Manual PDF

Details

biocViews Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License GPL-2
Depends R (>= 4.0), GO.db, GOstats
Imports lattice, httr, openxlsx, xtable
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PloGO2_1.0.0.tar.gz
Windows Binary PloGO2_1.0.0.zip
macOS 10.13 (High Sierra) PloGO2_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PloGO2
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PloGO2
Bioc Package Browser https://code.bioconductor.org/browse/PloGO2/
Package Short Url https://bioconductor.org/packages/PloGO2/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive