PloGO2
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see PloGO2.
Plot Gene Ontology and KEGG pathway Annotation and Abundance
Bioconductor version: 3.11
Functions for enrichment analysis and plotting gene ontology or KEGG pathway information for multiple data subsets at the same time. It also enables encorporating multiple conditions and abundance data.
Author: Dana Pascovici, Jemma Wu
Maintainer: Jemma Wu <jemma.wu at mq.edu.au>, Dana Pascovici <dana.pascovici at mq.edu.au>
citation("PloGO2")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PloGO2")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PloGO2")| PloGO2_vignette.pdf | R Script | |
| PloGO2_with_WGNCA_vignette.pdf | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
| License | GPL-2 |
| Depends | R (>= 4.0), GO.db, GOstats |
| Imports | lattice, httr, openxlsx, xtable |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PloGO2_1.0.0.tar.gz |
| Windows Binary | PloGO2_1.0.0.zip |
| macOS 10.13 (High Sierra) | PloGO2_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PloGO2 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PloGO2 |
| Bioc Package Browser | https://code.bioconductor.org/browse/PloGO2/ |
| Package Short Url | https://bioconductor.org/packages/PloGO2/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |