MiRaGE
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see MiRaGE.
MiRNA Ranking by Gene Expression
Bioconductor version: 3.11
The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.
Author: Y-h. Taguchi <tag at granular.com>
Maintainer: Y-h. Taguchi <tag at granular.com>
Citation (from within R, enter
citation("MiRaGE")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MiRaGE")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MiRaGE")| How to use MiRaGE Package | R Script | |
| Reference Manual |
Details
| biocViews | GeneExpression, ImmunoOncology, Microarray, RNASeq, SAGE, Sequencing, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL |
| Depends | R (>= 3.1.0), Biobase(>= 2.23.3) |
| Imports | BiocGenerics, S4Vectors, AnnotationDbi, BiocManager |
| System Requirements | |
| URL |
See More
| Suggests | seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MiRaGE_1.30.0.tar.gz |
| Windows Binary | MiRaGE_1.30.0.zip |
| macOS 10.13 (High Sierra) | MiRaGE_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MiRaGE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MiRaGE |
| Bioc Package Browser | https://code.bioconductor.org/browse/MiRaGE/ |
| Package Short Url | https://bioconductor.org/packages/MiRaGE/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |