MSstatsTMT

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see MSstatsTMT.

Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling


Bioconductor version: 3.11

Tools for protein significance analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling.

Author: Ting Huang [aut, cre], Meena Choi [aut], Sicheng Hao [aut], Olga Vitek [aut]

Maintainer: Ting Huang <thuang0703 at gmail.com>

Citation (from within R, enter citation("MSstatsTMT")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSstatsTMT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsTMT")
MSstatsTMT User Guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software
Version 1.6.6
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports limma, lme4, lmerTest, dplyr, tidyr, statmod, methods, reshape2, data.table, matrixStats, stats, utils, ggplot2, grDevices, graphics, MSstats
System Requirements
URL http://msstats.org/msstatstmt/
Bug Reports https://groups.google.com/forum/#!forum/msstats
See More
Suggests BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsTMT_1.6.6.tar.gz
Windows Binary MSstatsTMT_1.6.6.zip
macOS 10.13 (High Sierra) MSstatsTMT_1.6.6.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSstatsTMT
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsTMT
Bioc Package Browser https://code.bioconductor.org/browse/MSstatsTMT/
Package Short Url https://bioconductor.org/packages/MSstatsTMT/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive