MBttest

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see MBttest.

Multiple Beta t-Tests


Bioconductor version: 3.11

MBttest method was developed from beta t-test method of Baggerly et al(2003). Compared to baySeq (Hard castle and Kelly 2010), DESeq (Anders and Huber 2010) and exact test (Robinson and Smyth 2007, 2008) and the GLM of McCarthy et al(2012), MBttest is of high work efficiency,that is, it has high power, high conservativeness of FDR estimation and high stability. MBttest is suit- able to transcriptomic data, tag data, SAGE data (count data) from small samples or a few replicate libraries. It can be used to identify genes, mRNA isoforms or tags differentially expressed between two conditions.

Author: Yuan-De Tan

Maintainer: Yuan-De Tan <tanyuande at gmail.com>

Citation (from within R, enter citation("MBttest")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MBttest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBttest")
Analysing RNA-Seq count data with the "MBttest" package PDF R Script
MBttest-manual.pdf PDF
Reference Manual PDF
NEWS Text

Details

biocViews AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, MultipleComparison, SAGE, Sequencing, Software, Transcription
Version 1.16.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-3
Depends R (>= 3.3.0), stats, gplots, gtools, graphics, base, utils, grDevices
Imports
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MBttest_1.16.0.tar.gz
Windows Binary MBttest_1.16.0.zip
macOS 10.13 (High Sierra) MBttest_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MBttest
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MBttest
Bioc Package Browser https://code.bioconductor.org/browse/MBttest/
Package Short Url https://bioconductor.org/packages/MBttest/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive