LMGene

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see LMGene.

LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays


Bioconductor version: 3.11

LMGene package for analysis of microarray data using a linear model and glog data transformation

Author: David Rocke, Geun Cheol Lee, John Tillinghast, Blythe Durbin-Johnson, and Shiquan Wu

Maintainer: Blythe Durbin-Johnson <bpdurbin at ucdavis.edu>

Citation (from within R, enter citation("LMGene")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LMGene")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LMGene")
LMGene User's Guide PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, Microarray, Preprocessing, Software
Version 2.43.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License LGPL
Depends R (>= 2.10.0), Biobase(>= 2.5.5), multtest, survival, affy
Imports
System Requirements
URL http://dmrocke.ucdavis.edu/software.html
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Suggests affydata
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LMGene_2.43.0.tar.gz
Windows Binary LMGene_2.43.0.zip
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/LMGene
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LMGene
Bioc Package Browser https://code.bioconductor.org/browse/LMGene/
Package Short Url https://bioconductor.org/packages/LMGene/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive