KEGGREST
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see KEGGREST.
Client-side REST access to KEGG
Bioconductor version: 3.11
A package that provides a client interface to the KEGG REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.
Author: Dan Tenenbaum
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("KEGGREST")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("KEGGREST")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("KEGGREST")| Accessing the KEGG REST API | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, KEGG, Pathways, Software, ThirdPartyClient |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | methods, httr, png, Biostrings |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | Hiiragi2013, PAPi, ROntoTools |
| Imports Me | ADAM, attract, BiocSet, CNEr, EnrichmentBrowser, FELLA, gage, KEGGlincs, KEGGprofile, MAGeCKFlute, MetaboSignal, MWASTools, NoRCE, PADOG, pathview, PathwaySplice, SMITE, YAPSA |
| Suggests Me | globaltest |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | KEGGREST_1.28.0.tar.gz |
| Windows Binary | KEGGREST_1.28.0.zip |
| macOS 10.13 (High Sierra) | KEGGREST_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/KEGGREST |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/KEGGREST |
| Bioc Package Browser | https://code.bioconductor.org/browse/KEGGREST/ |
| Package Short Url | https://bioconductor.org/packages/KEGGREST/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |