GeneOverlap

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see GeneOverlap.

Test and visualize gene overlaps


Bioconductor version: 3.11

Test two sets of gene lists and visualize the results.

Author: Li Shen, Mount Sinai <shenli.sam at gmail.com>

Maintainer: Li Shen, Mount Sinai <shenli.sam at gmail.com>

Citation (from within R, enter citation("GeneOverlap")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneOverlap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneOverlap")
Testing and visualizing gene overlaps with the "GeneOverlap" package PDF R Script
Reference Manual PDF

Details

biocViews MultipleComparison, Software, Visualization
Version 1.24.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-3
Depends
Imports stats, RColorBrewer, gplots, methods
System Requirements
URL http://shenlab-sinai.github.io/shenlab-sinai/
See More
Suggests RUnit, BiocGenerics, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneOverlap_1.24.0.tar.gz
Windows Binary GeneOverlap_1.24.0.zip
macOS 10.13 (High Sierra) GeneOverlap_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GeneOverlap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneOverlap
Bioc Package Browser https://code.bioconductor.org/browse/GeneOverlap/
Package Short Url https://bioconductor.org/packages/GeneOverlap/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive