GRENITS
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see GRENITS.
Gene Regulatory Network Inference Using Time Series
Bioconductor version: 3.11
The package offers four network inference statistical models using Dynamic Bayesian Networks and Gibbs Variable Selection: a linear interaction model, two linear interaction models with added experimental noise (Gaussian and Student distributed) for the case where replicates are available and a non-linear interaction model.
Author: Edward Morrissey
Maintainer: Edward Morrissey <edward.morrissey at gmail.com>
citation("GRENITS")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GRENITS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GRENITS")| GRENITS | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Bayesian, GeneExpression, GeneRegulation, GraphAndNetwork, Network, NetworkInference, Software, TimeCourse |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.12.0), Rcpp (>= 0.8.6), RcppArmadillo (>= 0.2.8), ggplot2 (>= 0.9.0) |
| Imports | graphics, grDevices, reshape2, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | network |
| Linking To | Rcpp, RcppArmadillo |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GRENITS_1.40.0.tar.gz |
| Windows Binary | GRENITS_1.40.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | GRENITS_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GRENITS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GRENITS |
| Bioc Package Browser | https://code.bioconductor.org/browse/GRENITS/ |
| Package Short Url | https://bioconductor.org/packages/GRENITS/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |