GPA
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see GPA.
GPA (Genetic analysis incorporating Pleiotropy and Annotation)
Bioconductor version: 3.11
This package provides functions for fitting GPA, a statistical framework to prioritize GWAS results by integrating pleiotropy information and annotation data. In addition, it also includes ShinyGPA, an interactive visualization toolkit to investigate pleiotropic architecture.
Author: Dongjun Chung, Emma Kortemeier, Carter Allen
Maintainer: Dongjun Chung <dongjun.chung at gmail.com>
citation("GPA")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GPA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GPA")| GPA | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, Clustering, DifferentialExpression, GeneExpression, Genetics, GenomeWideAssociation, MultipleComparison, Preprocessing, SNP, Software, StatisticalMethod |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
| License | GPL (>= 2) |
| Depends | R (>= 4.0.0), methods, graphics, Rcpp |
| Imports | parallel, ggplot2, ggrepel, plyr, vegan, DT, shiny, shinyBS, stats, utils, grDevices |
| System Requirements | GNU make |
| URL | http://dongjunchung.github.io/GPA/ |
| Bug Reports | https://github.com/dongjunchung/GPA/issues |
See More
| Suggests | gpaExample |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GPA_1.0.0.tar.gz |
| Windows Binary | GPA_1.0.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | GPA_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GPA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GPA |
| Bioc Package Browser | https://code.bioconductor.org/browse/GPA/ |
| Package Short Url | https://bioconductor.org/packages/GPA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |