CausalR

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see CausalR.

Causal network analysis methods


Bioconductor version: 3.11

Causal network analysis methods for regulator prediction and network reconstruction from genome scale data.

Author: Glyn Bradley, Steven Barrett, Chirag Mistry, Mark Pipe, David Wille, David Riley, Bhushan Bonde, Peter Woollard

Maintainer: Glyn Bradley <glyn.x.bradley at gsk.com>, Steven Barrett <steven.j.barrett at gsk.com>

Citation (from within R, enter citation("CausalR")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CausalR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CausalR")
CausalR.pdf PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, GraphAndNetwork, ImmunoOncology, Microarray, Network, Network Inference, Proteomics, RNASeq, Software, SystemsBiology, Transcriptomics
Version 1.20.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL (>= 2)
Depends R (>= 3.2.0)
Imports igraph
System Requirements
URL
See More
Suggests knitr, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CausalR_1.20.0.tar.gz
Windows Binary CausalR_1.20.0.zip
macOS 10.13 (High Sierra) CausalR_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CausalR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CausalR
Bioc Package Browser https://code.bioconductor.org/browse/CausalR/
Package Short Url https://bioconductor.org/packages/CausalR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive