Category
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see Category.
Category Analysis
Bioconductor version: 3.11
A collection of tools for performing category (gene set enrichment) analysis.
Author: Robert Gentleman [aut], Seth Falcon [ctb], Deepayan Sarkar [ctb], Robert Castelo [ctb], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("Category")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Category")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Category")
Using Categories to Analyze Microarray Data | R Script | |
Using Chromosome Bands as Categories | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, GO, GeneSetEnrichment, Pathways, Software |
Version | 2.54.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
License | Artistic-2.0 |
Depends | methods, stats4, BiocGenerics, AnnotationDbi, Biobase, Matrix |
Imports | utils, stats, graph, RBGL, GSEABase, genefilter, annotate, DBI |
System Requirements | |
URL |
See More
Suggests | EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGG.db, karyoploteR, geneplotter, limma, lattice, RUnit, org.Sc.sgd.db, GOstats, GO.db |
Linking To | |
Enhances | |
Depends On Me | GOstats, PCpheno |
Imports Me | CARNIVAL, categoryCompare, cellHTS2, eisa, gCMAP, GmicR, interactiveDisplay, meshr, miRLAB, PCpheno, phenoTest, ppiStats, RDAVIDWebService, ReportingTools, scTensor |
Suggests Me | BiocCaseStudies, GSEAlm, MmPalateMiRNA, qpgraph, RnBeads |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Category_2.54.0.tar.gz |
Windows Binary | Category_2.54.0.zip |
macOS 10.13 (High Sierra) | Category_2.54.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Category |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Category |
Bioc Package Browser | https://code.bioconductor.org/browse/Category/ |
Package Short Url | https://bioconductor.org/packages/Category/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |