Cardinal
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see Cardinal.
A mass spectrometry imaging toolbox for statistical analysis
Bioconductor version: 3.11
Implements statistical & computational tools for analyzing mass spectrometry imaging datasets, including methods for efficient pre-processing, spatial segmentation, and classification.
Author: Kylie A. Bemis <k.bemis at northeastern.edu>
Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>
citation("Cardinal")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Cardinal")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Cardinal")
1. Cardinal 2: User guide for mass spectrometry imaging analysis | HTML | R Script |
2. Cardinal 2: Statistical methods for mass spectrometry imaging | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Classification, Clustering, ImagingMassSpectrometry, ImmunoOncology, Infrastructure, Lipidomics, MassSpectrometry, Normalization, Proteomics, Regression, Software |
Version | 2.6.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
License | Artistic-2.0 |
Depends | BiocGenerics, BiocParallel, EBImage, graphics, methods, S4Vectors(>= 0.23.18), stats, ProtGenerics |
Imports | Biobase, dplyr, irlba, lattice, Matrix, matter, magrittr, mclust, nlme, parallel, signal, sp, stats4, utils, viridisLite |
System Requirements | |
URL | http://www.cardinalmsi.org |
See More
Suggests | BiocStyle, testthat, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | CardinalWorkflows |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Cardinal_2.6.0.tar.gz |
Windows Binary | Cardinal_2.6.0.zip (32- & 64-bit) |
macOS 10.13 (High Sierra) | Cardinal_2.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Cardinal |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Cardinal |
Bioc Package Browser | https://code.bioconductor.org/browse/Cardinal/ |
Package Short Url | https://bioconductor.org/packages/Cardinal/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |