CALIB
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CALIB.
Calibration model for estimating absolute expression levels from microarray data
Bioconductor version: 3.11
This package contains functions for normalizing spotted microarray data, based on a physically motivated calibration model. The model parameters and error distributions are estimated from external control spikes.
Author: Hui Zhao, Kristof Engelen, Bart De Moor and Kathleen Marchal
Maintainer: Hui Zhao <hui.zhao at biw.kuleuven.be>
citation("CALIB")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CALIB")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Microarray, Preprocessing, Software, TwoChannel |
| Version | 1.54.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (17 years) |
| License | LGPL |
| Depends | R (>= 2.10), limma, methods |
| Imports | limma, methods, graphics, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CALIB |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CALIB |
| Package Short Url | https://bioconductor.org/packages/CALIB/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |