BridgeDbR
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see BridgeDbR.
Code for using BridgeDb identifier mapping framework from within R
Bioconductor version: 3.11
Use BridgeDb functions and load identifier mapping databases in R. It uses GitHub, Zenodo, and Figshare if you use this package to download identifier mappings files.
Author: Christ Leemans <christleemans at gmail.com>, Egon Willighagen <egon.willighagen at gmail.com>, Anwesha Bohler <anweshabohler at gmail.com>, Lars Eijssen <l.eijssen at maastrichtuniversity.nl>
Maintainer: Egon Willighagen <egon.willighagen at gmail.com>
citation("BridgeDbR")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BridgeDbR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BridgeDbR")
Tutorial | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, Cheminformatics, Metabolomics, Software |
Version | 1.22.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
License | AGPL-3 |
Depends | R (>= 3.3.0), rJava |
Imports | curl |
System Requirements | |
URL | https://github.com/bridgedb/BridgeDbR |
Bug Reports | https://github.com/bridgedb/BridgeDbR/issues |
See More
Suggests | BiocStyle, knitr, rmarkdown, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | BridgeDbR_1.22.0.tar.gz |
Windows Binary | BridgeDbR_1.22.0.zip |
macOS 10.13 (High Sierra) | BridgeDbR_1.22.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/BridgeDbR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BridgeDbR |
Bioc Package Browser | https://code.bioconductor.org/browse/BridgeDbR/ |
Package Short Url | https://bioconductor.org/packages/BridgeDbR/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |