ASpli
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see ASpli.
Analysis of alternative splicing using RNA-Seq
Bioconductor version: 3.11
Integrative pipeline for the analysis of alternative splicing using RNAseq.
Author: Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz
Maintainer: Estefania Mancini <emancini at leloir.org.ar>
Citation (from within R, enter
citation("ASpli")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ASpli")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ASpli")
Analysis of alternative splicing using ASpli | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription |
Version | 1.14.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
License | GPL |
Depends | methods, grDevices, stats, utils, parallel, edgeR |
Imports | GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, AnnotationDbi, Rsamtools, BiocStyle |
System Requirements | |
URL |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ASpli_1.14.0.tar.gz |
Windows Binary | ASpli_1.14.0.zip |
macOS 10.13 (High Sierra) | ASpli_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ASpli |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ASpli |
Bioc Package Browser | https://code.bioconductor.org/browse/ASpli/ |
Package Short Url | https://bioconductor.org/packages/ASpli/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |