ASpediaFI
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ASpediaFI.
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events
Bioconductor version: 3.11
This package provides functionalities for a systematic and integrative analysis of alternative splicing events and their functional interactions.
Author: Doyeong Yu, Kyubin Lee, Daejin Hyung, Soo Young Cho, Charny Park
Maintainer: Doyeong Yu <parklab.bi at gmail.com>
citation("ASpediaFI")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ASpediaFI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ASpediaFI")| ASpediaFI.pdf | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AlternativeSplicing, Annotation, Coverage, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Network, NetworkInference, Pathways, Reactome, Sequencing, Software, Transcription, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6.0), SummarizedExperiment, ROCR |
| Imports | BiocParallel, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, IVAS, Rsamtools, biomaRt, limma, S4Vectors, stats, DRaWR, GenomeInfoDb, Gviz, Matrix, dplyr, fgsea, reshape2, igraph, graphics, e1071, methods, rtracklayer, scales, grid, ggplot2, mGSZ, utils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/nachoryu/ASpediaFI |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ASpediaFI_1.2.0.tar.gz |
| Windows Binary | ASpediaFI_1.2.0.zip |
| macOS 10.13 (High Sierra) | ASpediaFI_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ASpediaFI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ASpediaFI |
| Bioc Package Browser | https://code.bioconductor.org/browse/ASpediaFI/ |
| Package Short Url | https://bioconductor.org/packages/ASpediaFI/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |