ABSSeq

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see ABSSeq.

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences


Bioconductor version: 3.11

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Author: Wentao Yang

Maintainer: Wentao Yang <wyang at zoologie.uni-kiel.de>

Citation (from within R, enter citation("ABSSeq")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ABSSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABSSeq")
ABSSeq PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, Software
Version 1.42.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL (>= 3)
Depends R (>= 2.10), methods
Imports locfit, limma
System Requirements
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Suggests edgeR
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Depends On Me
Imports Me metaseqR2
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ABSSeq_1.42.0.tar.gz
Windows Binary ABSSeq_1.42.0.zip
macOS 10.13 (High Sierra) ABSSeq_1.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ABSSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ABSSeq
Bioc Package Browser https://code.bioconductor.org/browse/ABSSeq/
Package Short Url https://bioconductor.org/packages/ABSSeq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive