commonLinesSearchByVoting
Usage
Usage: commonLinesSearchByVoting
Options:
[-i[nput] In (NULL )] :Optional :InputCorrelationMapList
[-i[nput]c[ommonLines]InC (NULL )] :Optional :InputCommonLinesList
[-i[nput]c[orrect]c[ommonLines]InCC (NULL )] :Optional :InputCorrectCommonLinesList
[-o[utput] Out (NULL )] :Essential :OutputFilteredCommonLinesList
[-o[utput]a[ll] OutA (NULL )] :Optional :OutputAllCommonLinesList
[-o[utput]d[etecting]r[ate]OutDR (NULL )] :Optional :OutputDetectingRate
[-o[utput]d[etecting]r[ate]a[ll]OutDRA (NULL )] :Optional :OutputDetectingRateALL
[-o[utput]p[eaks]h[istgram]OutPH (NULL )] :Optional :OutputPeaksHistgram
[-e[stimation]n[umber]en (1 )] :Optional :EstimationNumber
[-th[resholdLevel] th (1 )] :Optional :ThresholdLevel
[-histgramCreate[Flag]] :Optional :HistgramCreateFlag
[-extend[VotingFlag] ] :Optional :ExtendVotingFlag
[-c[onfig] configFile (NULL )] :Optional :ConfigurationFile
[-m[ode] mode (0 )] :Optional :Mode
----- Additional Usage -----
Common lines are filtered only top G*100/sqrt(N) %, where N is the number of projections.
-extend Option
Execute extended voting.
-m Option
0: normal
1: self voting (each angle histgram peak is multiplyed by its correlation value)
-th Option
:
-1: G = 2^(-1)
0: G = 2^0
1: G = 2^1
2: G = 2^2
:
-en Option
Estimation number of common line in a map.
Running time is proportional to this number.
Default; 1: the largest value in a correlation map is detected as common line.
MapList Format
numOfProjection1 numOfProjection2 mapFileName
: : :
CLinesList Format
numOfProjection1 numOfProjection2 [ degOfProjection1 degOfProjection2 degDiff cor ] mapFileName
: : : : : : :
Voting Algorithm by Amit Singer et al (2010),
"Detecting consistent common lines in cryo-EM by voting " (doi:10.1016/j.jsb.2009.11.003)
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