pdbHelix

Usage

Usage: pdbHelix
Options:
    [-i[nput]            In                  (NULL      )] :Essential :InputDataFile
    [-o[utput]           Out                 (NULL      )] :Optional  :OutputDataFile
    [-3[D]               Out3D               (NULL      )] :Optional  :OutputDataFile(3D-mrc)
    [-2[D]               Out2D               (NULL      )] :Optional  :OutputDataFile(2D-mrc projection(y-z))
    [-d[elta]            delta               (5         )] :Optional  :delta[A](mrc-file)
    [-p[delphi]          delphi              (165       )] :Essential :deltaPhi
    [-dp[delphi]         deldelphi           (5         )] :Optional  :deltaDeltaPhi
    [-z[deltaz]          delz                (5         )] :Essential :deltaz
    [-n[Molecule]        nMolecule           (1         )] :Essential :NumberOfMolecules
    [-nx                 nx                  (1         )] :Optional  :Pixel[Def:]
    [-ny                 ny                  (1         )] :Optional  :Pixel[Def:]
    [-nz                 nz                  (1         )] :Optional  :Pixel[Def:]
    [-Sx[tart]           Startx              (0.0       )] :Optional  :Startx[A]
    [-Sy[tart]           Starty              (0.0       )] :Optional  :Starty[A]
    [-Sz[tart]           Startz              (0.0       )] :Optional  :Startz[A]
    [-w[eight]           Weight              (1.0       )] :Optional  :Weight
    [-dx                 dx                  (2.5       )] :Optional  :dx
    [-dy                 dy                  (2.5       )] :Optional  :dy
    [-dz                 dz                  (2.5       )] :Optional  :dz
    [-startn             startn              (0         )] :Optional  :start molecule's index
    [-startC             startID             (A         )] :Optional  :start chain ID
    [-deltaSeq           deltaSeq            (1000      )] :Optional  :start chain ID
    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         )] :Optional  :Mode