commonLinesSearchByVoting

Usage

Usage: commonLinesSearchByVoting
Options:
    [-i[nput]            In                  (NULL      )] :Optional  :InputCorrelationMapList
    [-i[nput]c[ommonLines]InC                 (NULL      )] :Optional  :InputCommonLinesList
    [-i[nput]c[orrect]c[ommonLines]InCC                (NULL      )] :Optional  :InputCorrectCommonLinesList
    [-o[utput]           Out                 (NULL      )] :Essential :OutputFilteredCommonLinesList
    [-o[utput]a[ll]      OutA                (NULL      )] :Optional  :OutputAllCommonLinesList
    [-o[utput]d[etecting]r[ate]OutDR               (NULL      )] :Optional  :OutputDetectingRate
    [-o[utput]d[etecting]r[ate]a[ll]OutDRA              (NULL      )] :Optional  :OutputDetectingRateALL
    [-o[utput]p[eaks]h[istgram]OutPH               (NULL      )] :Optional  :OutputPeaksHistgram
    [-e[stimation]n[umber]en                  (1         )] :Optional  :EstimationNumber
    [-th[resholdLevel]   th                  (1         )] :Optional  :ThresholdLevel
    [-histgramCreate[Flag]] :Optional  :HistgramCreateFlag
    [-extend[VotingFlag] ] :Optional  :ExtendVotingFlag
    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         )] :Optional  :Mode
----- Additional Usage -----
Common lines are filtered only top G*100/sqrt(N) %, where N is the number of projections.
-extend Option 
    Execute extended voting.
-m Option 
    0: normal
    1: self voting (each angle histgram peak is multiplyed by its correlation value)
-th Option 
    : 
   -1: G = 2^(-1) 
    0: G = 2^0 
    1: G = 2^1 
    2: G = 2^2 
    : 
-en Option 
    Estimation number of common line in a map. 
    Running time is proportional to this number.
    Default; 1: the largest value in a correlation map is detected as common line.
MapList Format
    numOfProjection1 numOfProjection2 mapFileName
           :                :              :     
CLinesList Format
    numOfProjection1 numOfProjection2 [ degOfProjection1 degOfProjection2 degDiff cor ] mapFileName
           :                :                 :                :            :      :         :     
Voting Algorithm by Amit Singer et al (2010),
"Detecting consistent common lines in cryo-EM by voting " (doi:10.1016/j.jsb.2009.11.003)
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