defocusDeterminationFromThonRing
Usage
Usage: defocusDeterminationFromThonRing
Options:
[-i[nput] In (stdin )] :Optional :InputDataFile
[-i[nput] N[ame] InN (stdin )] :Optional :InputNameInInformationFile
[-i[nput] R[eference]InR (stdin )] :Optional :InputReferenceForLength
[-o[utput] Out (stdout )] :Optional :OutputDataFile
[-o[utput] I[nformation]OutI (stdout )] :Optional :OutputInformationFile
[-o[utput] I[nformation]OutI2 (stdout )] :Optional :OutputInformationFile
[-o[utput] I[nformation]OutI3 (stdout )] :Optional :OutputInformationFile
[-kV kV (200 )] :Optional :kV
[-Cs Cs (2.1 )] :Optional :Cs[mm]
[-A[mplitude contrast]AoverP (0.05 )] :Optional :The ratio of amplitude contrast to phase contrast
[-c[onfig] configFile (NULL )] :Optional :ConfigurationFile
[-m[ode] mode (0 )] :Optional :Mode
[-ctfMode ctfMode (0 )] :Optional :CTFMode
[-truePitch truePitch (430 )] :Optional :True Pitch
[-PixelSize PixelSize (5 )] :Optional :Pixel Size [A]
[-deltadY deltadY (0.5 )] :Optional :A range of deltadY to determine dY.
[-R[/A] R (NULL )... ] :Variable :ThonRing[/A]
----- Additional Usage -----
>>>> o[uput] I[nformation] <<<<
This file is used for [mrcImageMultiCTFCompensation and mrcImageCTFCompensation]
>>>> o[uput] I[nformation] 2<<<<
This file is used for [llDataCTFCompensate -I2]
>>>> o[uput] I[nformation] 3<<<<
This file is used for [llExtractWithLayerSeparation]
Options: -truePitch, -PixelSize, -deltadY and -ctfMode
>>>> ctfMode <<<<
0: Phase CTF
1: PhaseCTF + ratio*AmpCTF
>>>> mode <<<<
No action