mrcImageMultiCTFCompensation

Usage

Usage: mrcImageMultiCTFCompensation
Options:
    [-i[nput]            In                  (stdin     )] :Essential :Input: filename ...
    [-info2              CTF                 (stdin     )] :Optional  :InputFileList: the same order as the input: ctfinfo from Display2/ctfDisplay
    [-o[utput]           Out                 (stdout    )] :Essential :OutputDataFile(average file)
    [-f[ft]              fftOut              (stdout    )] :Optional  :OutputDataFile(averaged fft file)
    [-W[hiteNoise]       WhiteNoise          (1.0       )] :Optional  :
    [-W[hiteNoise]R[aising]WhiteNoiseRaising   (1.0       )] :Optional  :Weight:W*exp(WR*R)
    [-SinWin             SinWinRmin          (0.1       )SinWinRmax          (1.0       )] :Optional  :Windowing by sine function from Rmin[/A] to Rmax[/A]
    [-MaxIter[ation]     MaxIter             (10        )] :Optional  :Max Iteration
    [-ctfMode            CTFMode             (1         )] :Optional  :CTFMode: refer to mrcImageCTFObservation
    [-solventMode        solventMode         (0         )] :Optional  :If solvent flatterning is used, NEED
    [-solventSTD         solventSTD          (-1.0      )] :Optional  :If solvent flatterning is used as mode=1, NEED 
    [-log[file]          Log                 (stderr    )] :Optional  :Log File Name
    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         )] :Optional  :Mode
----- InputFileFormat -----
filename0 deltaF[A] Cs[mm] kV[kV] ratioOfAmpToPhase
filename1 deltaF[A] Cs[mm] kV[kV] ratioOfAmpToPhase
.................

----- Input: ctfinfo, with the same order as the input; from Display2/ctfDisplay -----
filename0.ctfinfo 
filename1.ctfinfo 
.................

mode: 0  : CTF-weighted compensation, CTF/(SQR(CTF) + (NS)^2)
mode: +1 : Adding solvent-flattening process
mode: +16: Without phase flipping, in case of images after phase only correction.