mrc2Dto3D
Usage
Usage: mrc2Dto3D
Options:
[-i[nput] In (NULL )] :Optional :InputDataFile
[-I[nput] In2 (NULL )] :Optional :InputDataFile
[-o[utput] Out (NULL )] :Essential :OutputDataFile
[-O[utput] Out2 (NULL )] :Optional :OutputDataFile[2DMulti]
[-single single (1 )] :Optional :SingleTiltMode
[-InterpolationMode InterpolationMode (1 )] :Optional :InterpolationMode
[-Double ] :Optional :DoubleTiltMode
[-DoubleCounter DoubleCounter (NULL )] :Optional :DoubleCounter
[-CounterThreshold CounterThreshold (1e-6 )] :Optional :CounterThreshold
[-CounterThresholdModeCounterThresholdMode(0 )] :Optional :CounterThresholdMode
[-WeightMode WeightMode (0 )] :Optional :WeightMode
[-thicknessWeight ] :Optional :ThicknessWeight
[-Sub[Sampling] SubSampling (1 )] :Optional :SubSampling: [pixel]
[-PlusXrot ] :Optional :plus x-rotation by 180 for rasmol.
[-N Nx (0 )Ny (0 )Nz (0 )] :Optional :OutputSize
[-SIRT ] :Optional :by SIRT
[-max[Iter] maxIter (30 )] :Optional :MaxIteration for SIRT
[-rms rms (1.0 )] :Optional :Ending Conditions: rms for SIRT
[-CTF[Info] CTFInfo (NULL )] :Optional :CTFInfo: for SIRT
[-c[onfig] configFile (NULL )] :Optional :ConfigurationFile
[-m[ode] mode (0 )] :Optional :Mode
----- Additional Usage -----
-m Option
0:SimpleBackProjection
1:FilteredBackProjection
-single 0|1
0: tilt axis is parallel to x-axis
1: tilt axis is parallel to y-axis
-Double
Double Tilt
-WeightMode
1 : RealSpace: Circle(same density)
2 : RealSpace: Circle(weighted density)
3 : RealSpace: Square(weighted density)
4 : Fourier Space : Plane(same density) -CounterThreshold 0.5
5 : Fourier Space : Plane(Linear Gradient)-CounterThreshold 0.5
6 : Fourier Space : Plane(Cosine Gradient) Current Recommende using -CounterThreshold 0.5
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-I Option file format
filename0 RotationOrder0 rot1 rot2 rot3
filename1 RotationOrder1 rot1 rot2 rot3
.......................................
>>> RotationOrder : Eular Angle Expression <<<
Example: YOYS : RotY(rot3)RotX(rot2)RotY(rot1)*v
First Rotation : y-axis : Y: Y : [X|Y|Z] Axis used initially
Second Rotation : x-axis : O: Odd : [O|E] Parity of axis permutation
Last Rotation : z-axis : Y: Yes : [Y|N] Repetition of initial axis as last
v1 = A v0 : S: Staic : [S|R] Frame from which axes are taken