mrcImageOrientationSearchBySimultaneousMinimization

Usage

Usage: mrcImageOrientationSearchBySimultaneousMinimization
Options:
    [-I[nputFileList]    In                  (NULL      )] :Essential :InputDataFileList
    [-o[utput]           Out                 (NULL      )] :Essential :OutputDataFile
    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         )] :Optional  :Mode
    [-dt[heta]           dtheta              (1         )] :Optional  :dtheta
    [-dp[si]             dpsi                (1         )] :Optional  :dpsi
    [-m[odeof]s[election]ms                  (0         )] :Optional  :modeofselection
    [-i[nitial]r[andom]d[ata]ird                 (1         )] :Optional  :InitialRandomData
    [-M[ax]C[ount]       MC                  (100       )] :Optional  :MaxCount
    [-F[ileName]H[eader] FileNameHeader      (EulerAngle)] :Optional  :FileNameHeader
    [-m[odeof]i[nitial]d[ada]mid                 (0         )] :Optional  :modeofinitialdata
    [-i[nputFile]i[nitial]d[ata]InInitial           (NULL      )] :Optional  :InputDataFileOfInitialData
    [-m[odeof]s[tart]p[oint]msp                 (0         )] :Optional  :mode of start point
    [-m[odeof]a[ngular]a[rea]maa                 (0         )] :Optional  :mode of angular area
    [-p[revious]dt[heta] pdtheta             (0         )] :Optional  :previous dtheta
    [-p[revious]dp[si]   pdpsi               (0         )] :Optional  :previous dpsi
    [-m[ode]L[calculation]modeL               (0         )] :Optional  :Mode of L calculation
    [-m[ode]T[hreshold]A[ngularweight]modeTA              (0         )] :Optional  :Mode of Threshold of AngularWeight
    [-m[ode]c[alculation]a[rea]modeCA              (0         )] :Optional  :mode of Lvalue of calculation area
    [-t[hreshold]c[alculation]a[rea]TCA                 (0         )] :Optional  :Threshold of Lvalue of calculation area
    [-m[ode]f[ix]        modeF               (0         )] :Optional  :mode of fix

----- ModeSelection -----
-ms : 0 : random
    : 1 : myself (-ird)

----- Mode --------------
-m : 0 : input data --> sinogram
   : 1 :            --> sinogramFT

----- Angle -------------
-dt    : DEGREE
-dp    : DEGREE
-pdt   : DEGREE
-pdp   : DEGREE

----- ModeOfInitialData -------------
-mid : 0 : There is not initial data
       1 : There is     initial data (-iid)

----- ModeOfLcalculation -------------
-mL : 0 : differential of length
      1 : differential of phase
      2 : addition to derivation1D (multiply)
      3 : addition to derivation1D (difference)

----- ModeOfThresholdAngularWeight -------------
-mTA : 0 : 1.0e-4
       1 : 1 degree
       2 : dpsi

----- ModeOfStartPoint -------------
-msp : 0 : origin
       1 : initial data (-iid)

----- ModeOfAngularArea -------------
-maa : 0 : all area
       1 : aroud previous delta (-pdt -pdp)

----- ModeOfCalculationArea -------------
-mca : 0 : all area
       1 : cut under -tca(1/angstrom)

----- ModeOfFix -------------
-mf : 0 : don't fix one plane
      1 :       fix one plane (first file is fixed)