mrcImageMultiCTFCompensation
Usage
Usage: mrcImageMultiCTFCompensation
Options:
[-i[nput] In (stdin )] :Essential :Input: filename ...
[-info2 CTF (stdin )] :Optional :InputFileList: the same order as the input: ctfinfo from Display2/ctfDisplay
[-o[utput] Out (stdout )] :Essential :OutputDataFile(average file)
[-f[ft] fftOut (stdout )] :Optional :OutputDataFile(averaged fft file)
[-W[hiteNoise] WhiteNoise (1.0 )] :Optional :
[-W[hiteNoise]R[aising]WhiteNoiseRaising (1.0 )] :Optional :Weight:W*exp(WR*R)
[-SinWin SinWinRmin (0.1 )SinWinRmax (1.0 )] :Optional :Windowing by sine function from Rmin[/A] to Rmax[/A]
[-MaxIter[ation] MaxIter (10 )] :Optional :Max Iteration
[-ctfMode CTFMode (1 )] :Optional :CTFMode: refer to mrcImageCTFObservation
[-solventMode solventMode (0 )] :Optional :If solvent flatterning is used, NEED
[-solventSTD solventSTD (-1.0 )] :Optional :If solvent flatterning is used as mode=1, NEED
[-log[file] Log (stderr )] :Optional :Log File Name
[-c[onfig] configFile (NULL )] :Optional :ConfigurationFile
[-m[ode] mode (0 )] :Optional :Mode
----- InputFileFormat -----
filename0 deltaF[A] Cs[mm] kV[kV] ratioOfAmpToPhase
filename1 deltaF[A] Cs[mm] kV[kV] ratioOfAmpToPhase
.................
----- Input: ctfinfo, with the same order as the input; from Display2/ctfDisplay -----
filename0.ctfinfo
filename1.ctfinfo
.................
mode: 0 : CTF-weighted compensation, CTF/(SQR(CTF) + (NS)^2)
mode: +1 : Adding solvent-flattening process
mode: +16: Without phase flipping, in case of images after phase only correction.