mrcImageModelCreate

Usage

Usage: mrcImageModelCreate
Options:
    [-o[utput]           Out                 (NULL      )] :Essential :OutputDataFile
    [-i[nput]            In                  (NULL      )] :Optional  :InputDataFile
    [-nx                 nx                  (70        )] :Optional  :Real length = nx * lx
    [-ny                 ny                  (70        )] :Optional  :Real length = ny * ly
    [-nz                 nz                  (100       )] :Optional  :Real lenght = nz * lz
    [-r                  r                   (1         )] :Optional  :Radius[pixel]
    [-lx                 lx                  (5.0       )] :Optional  :Pixel Size[Angstrom]
    [-ly                 ly                  (5.0       )] :Optional  :Pixel Size[Angstrom]
    [-lz                 lz                  (5.0       )] :Optional  :Pixel Size[Angstrom]
    [-radius             radius              (150       )] :Optional  :filament radius [A]
    [-n                  nHelix              (3         )] :Optional  :n-helix
    [-dz                 zPitch              (143       )] :Optional  :pitch [A]
    [-dphi               deltaPhi            (40        )] :Optional  :rotation angle [degree]
    [-phi                phiAngle            (120       )] :Optional  :rotation angle in the same level [degree]
    [-sz                 startZ              (0         )] :Optional  :start z [A]
    [-ez                 endZ                (500       )] :Optional  :end z [A]
    [-sphi               startPhi            (0         )] :Optional  :start angle [degree]
    [-sphi2              startPhi2           (40        )] :Optional  :start angle 2 [degree]
    [-inMode             inMode              (0         )] :Optional  :inMode
    [-units              units               (9         )] :Optional  :units number
    [-fm                 fm                  (0         )] :Optional  :formation
    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         )] :Optional  :Mode
>>>> Mode <<<< (-m)
0: Circle(a right cylinder:3D) and Triangle(a trigonal prism:3D) 
       Optional argument : -nx -ny -nz -r  
1: Thick Filaments 
		Example 
       Optional argument 
       -nx -ny -nz Image Size 
       -lx -ly -lz Pixel Size 
       -radius filament radius 150[A]
       -n  three helix 
       -dz  pitch 143[A] 
       -dphi rotation angle 40[degree]
       -phi rotation angle in the same level 120[degree]
       -sz  start z 0[A]
       -ez  end z 800[A]
       -sphi start phi 0[degree]
       -----------------------
       -inMode Centre = 0     
       -inMode Origin = 1     
       -----------------------
       -units 9 
       -fm formation of Gauss Sphere (t=1, u=9 and n=3)
       	0: normal 
       	1: 3 sphere on the same z
       		Phi 0 , 30 , 60 degree    
           2: 3 sphere on the differnt z  and on the differnt radius
       		Phi 0 , 30 , 60 degree    
       		Z  0 , 30 , 60 A         
       		Radius 0 ,1.2 ,1.4 times     
           3: 3 sphere on the same z and on the different radius
       		Phi 0 , 30 , 60 degree    
       		Z  0 ,  0 ,  0 A         
       		Radius 0 ,1.2 ,1.4 times     
       -----------------------
       -units 3 
       -fm formation of Gauss Sphere (t=1, u=3 and n=3)
       	0: abnormal 
2: Dot(2D)
3: Projection of 2 Sphere and 2 circle for 2D 
       Optional argument : -nx -ny   
4: Another Projection of 2 Sphere and 2 circle for 2D 
       Optional argument : -nx -ny   
5: Another Projection of 2 Sphere for 2D 
       Optional argument : -nx -ny   
6: SheppLogan 2D 
       Optional argument : -nx -ny   
7: SheppLogan 3D 
       Optional argument : -nx -ny -nz