mrcImageAutoFilamentExtract
Usage
Usage: mrcImageAutoFilamentExtract
Options:
[-i[nput] In (NULL )] :Essential :InputDataFile
[-i[nput]S[ource]fileInS (NULL )] :Essential :InputSourceFile
[-o[utput]E[xtract] OutE (NULL )] :Essential :OutputFileForExtraction
[-o[utput] Out (stdout )] :Optional :Output Log File
[-o[utput]F[inal] OutF (stdout )] :Optional :OutputFinalFile
[-r[oi]ROI blx (0.0 )bly (0.0 )brx (0.0 )bry (0.0 )trx (0.0 )try (0.0 )tlx (0.0 )tly (0.0 )] :Optional :Rectangle ROI
[-r[oi]Unbent roiLine (0.0 )... ] :Variable :
[-x x (120 )] :Optional :x range for ROI or Unbent
[-d[elta]dYmax ddYmax (0.9 )] :Optional :delta dY max
[-d[elta]dYmin ddYmin (0.2 )] :Optional :delta dY mim
[-T[ransepose] T (0 )] :Optional :corresponding to mrcImageTransepose mode
[-maxd[elta]Y maxdY (12 )] :Optional :Maximum number of layer line
[-H[eight] R[ange] HeightRange (0 )] :Optional :Height Range [Pixel]
[-RMaxX RMaxX (0.05 )] :Optional :RMaxX [1/A] (supported mode 1)
[-mag mag (1.1 )] :Optional :magnification ratio
[-truePitch truePitch (430 )] :Optional :True Pitch [A]
[-PixelSize PixelSize (5 )] :Optional :Pixel Size [A]
[-finaly finaly (0 )] :Optional :final y [pixel] for extraction
[-Ignore Ignore (0 )] :Optional :Ignore the final y
[-c[onfig] configFile (NULL )] :Optional :ConfigurationFile
[-m[ode] mode (0 )] :Optional :Mode
----- Additional Usage -----
----- mode -----
0 : Meridian Reflection
1 : All layer-lines
----- NOTE for Heigth Range-----
HR option is stranger than caliculated HR
----- NOTE for ROI-----
-rROI, -rUnbent, -iS, -ddYmax, -ddYmin and -T options are for ROI
----- NOTE for File for Extraction-----
-oE file use as extraction file.
----- NOTE for FINAL-----
-finaly and -oF is for final extraction
-truePitch, -Ly and -dY are for magnification change
-Ignore option ignore finaly
This extract do with magnification and header change