mrcImageCTFCompensation

Usage

Usage: mrcImageCTFCompensation
Options:
    [-i[nput]            In                  (stdin     )] :Essential :InputFile
    [-o[utput]           Out                 (stdout    )] :Essential :OutputDataFile
    [-info[mation]       Info                (NULL      )] :Optional  :InformationFile(Essense only)
    [-info[mation]2      Info2               (NULL      )] :Optional  :InformationFile2(Display2 ctfinfo format)
    [-kV                 kV                  (200       )] :Optional  :AccVol[kV]
    [-Cs                 Cs                  (2.1       )] :Optional  :Cs[mm]
    [-df                 Defocus             (27000     )] :Optional  :Defocus[A]:under(+)
    [-white              WhiteNoise          (0.1       )] :Optional  :WhiteNoise(N/S)
    [-SinWin             SinWinRmin          (0.1       )SinWinRmax          (1.0       )] :Optional  :Windowing by sine function from Rmin[/A] to Rmax[/A].Default: No Window.
    [-A[mplitude contrast]Amp                 (0.1       )] :Optional  :The ratio of amplitude contrast to phase contrast
    [-Astig[matism]      dfMin               (0         )dfMax               (0         )asAxis              (0         )] :Optional  :With Astigmatism
    [-NoAstig[matism]    ] :Optional  :Without Astigmatism
    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         )] :Optional  :Mode
----- mode -----
mode 0: No Correction
mode 1: x ctf/|ctf|, phase flipping
mode 2: x ctf,       phase flipping and ctf-multiplying
mode 3: x 1/ctf    (0.1<|ctf|       phase flipping and ctf-divided
mode 4: x ctf/(SQR(ctf)+SQR(NS))    phase-flipping + Winner Filtering 
mode 5: x SQR(ctf) x ctf/|ctf|      phase-flipping + ctf-Weighted
mode 6: x 1/|ctf|  (0.1<|ctf|)      No phase-flipping + ctf-divided
mode 7: x |ctf|/(SQR(ctf)+SQR(NS))  No phase flipping + Winner Filtering 
mode 8: x  ctf /(SQR(ctf)+SQR(NS*exp(a*R)))  phase flipping + Winner Filtering + NS-raising 
mode 9: x |ctf|/(SQR(ctf)+SQR(NS*exp(a*R)))  No phase flipping + Winner Filtering + NS-raising 
----- Note -----
You can enter information from -info
Info file was made by llExtractWithLayerSeparationFilamentInfo -oI 
defocus Cs kV AmplitudeContrast
----- Note1 -----
-NoStig is the highest priority and so -Astig and parameters in -info2 are ignored.