mrcImageMasking

Usage

Usage: mrcImageMasking
Options:
    [-i[nput]            In                  (NULL      )] :Essential :InputDataFile
    [-o[utput]           Out                 (NULL      )] :Essential :OutputDataFile
    [-nx                 nx                  (0         )] :Optional  :Default:in.HeaderN.x
    [-ny                 ny                  (0         )] :Optional  :Default:in.HeaderN.y
    [-nz                 nz                  (0         )] :Optional  :Default:in.HeaderN.z
    [-cx                 cx                  (0         )] :Optional  :Default:Center of image
    [-cy                 cy                  (0         )] :Optional  :Default:Center of image
    [-cz                 cz                  (0         )] :Optional  :Default:Center of image
    [-Rot[ation]         Euler               (0         )Rot1                (0         )Rot2                (0         )Rot3                (0         )] :Optional  :Masking Area Rotation Default: ZONS 0 0 0
    [-Shape              Shape               (0         )] :Optional  :Default:Circle
    [-Normalize          Normalize           (0         )] :Optional  :Default:No Op
    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         )] :Optional  :Mode
----- -Shape Option ----- 
    -Shape 0 : Circle : radius(nx, ny, nz)
    -Shape 1 : Square : radius(nx, ny, nz)
----- -m Option----- 
    -m 0 : masked by avg
    -m 1 : masked by 0