mrcImageMasking

Usage

Usage: mrcImageMasking
Options:
    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile
    [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :OutputDataFile
    [-nx                 nx                  (0         ).as(Real                ) ] :Optional  :[pix] Default:in.HeaderN.x
    [-ny                 ny                  (0         ).as(Real                ) ] :Optional  :[pix]  Default:in.HeaderN.y
    [-nz                 nz                  (0         ).as(Real                ) ] :Optional  :[pix] Default:in.HeaderN.z
    [-cx                 cx                  (0         ).as(Real                ) ] :Optional  :[pix] Default:Center of image
    [-cy                 cy                  (0         ).as(Real                ) ] :Optional  :[pix] Default:Center of image
    [-cz                 cz                  (0         ).as(Real                ) ] :Optional  :[pix] Default:Center of image
    [-Rot[ation]         Euler               (0         ).as(String              ) 
                         Rot1                (0         ).as(Real                ) 
                         Rot2                (0         ).as(Real                ) 
                         Rot3                (0         ).as(Real                ) ] :Optional  :Masking Area Rotation Default: ZONS 0 0 0
    [-Shape              Shape               (0         ).as(Integer             ) ] :Optional  :Default:Sphere
    [-Soft[Edge]         Soft                (0         ).as(Integer             ) ] :Optional  :Default:
    [-SoftWidth          SoftWidth           (0.0       ).as(Real                ) ] :Optional  :[pix] Default:
    [-Normalize          Normalize           (0         ).as(Integer             ) ] :Optional  :Default:No Op
    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
----- -Shape Option ----- 
    -Shape 0 : Sphere: radius(nx, ny, nz)
    -Shape 1 : Square : nx x ny x nz
    -Shape 2 : Cylinder: radius(nx, ny) x nz
----- -m Option----- 
    -m 0 : masked by avg
    -m 1 : masked by 0
    -m 2 : masked by 1