mrcImageMasking
Usage
Usage: mrcImageMasking
Options:
[-i[nput] In (NULL ).as(inFile ) ] :Essential :InputDataFile
[-o[utput] Out (NULL ).as(outFile ) ] :Essential :OutputDataFile
[-nx nx (0 ).as(Real ) ] :Optional :[pix] Default:in.HeaderN.x
[-ny ny (0 ).as(Real ) ] :Optional :[pix] Default:in.HeaderN.y
[-nz nz (0 ).as(Real ) ] :Optional :[pix] Default:in.HeaderN.z
[-cx cx (0 ).as(Real ) ] :Optional :[pix] Default:Center of image
[-cy cy (0 ).as(Real ) ] :Optional :[pix] Default:Center of image
[-cz cz (0 ).as(Real ) ] :Optional :[pix] Default:Center of image
[-Rot[ation] Euler (0 ).as(String )
Rot1 (0 ).as(Real )
Rot2 (0 ).as(Real )
Rot3 (0 ).as(Real ) ] :Optional :Masking Area Rotation Default: ZONS 0 0 0
[-Shape Shape (0 ).as(Integer ) ] :Optional :Default:Sphere
[-Soft[Edge] Soft (0 ).as(Integer ) ] :Optional :Default:
[-SoftWidth SoftWidth (0.0 ).as(Real ) ] :Optional :[pix] Default:
[-Normalize Normalize (0 ).as(Integer ) ] :Optional :Default:No Op
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
----- -Shape Option -----
-Shape 0 : Sphere: radius(nx, ny, nz)
-Shape 1 : Square : nx x ny x nz
-Shape 2 : Cylinder: radius(nx, ny) x nz
----- -m Option-----
-m 0 : masked by avg
-m 1 : masked by 0
-m 2 : masked by 1