mrcImageSolventFlattening

Usage

Usage: mrcImageSolventFlattening
Options:
    [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile
    [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :OutputDataFile
    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
    [-rmax               rmax                (190       ).as(Real                ) ] :Optional  :rmax [A]
    [-sd                 Range               (0         ).as(Real                ) ] :Optional  :Assign voxels below MeanOfSolvent+Range*SDofSolvent as Solvent
    [-density            density             (0         ).as(Real                ) ] :Optional  :embed mean lower than density value
    [-Floating                                                                     ] :Optional  :data minus mean of Solvent
    [-oparam[eter]       OutParam            (stdout    ).as(outFile             ) ] :Optional  :Output: Parameters
    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
----- Additional Usage -----
-m 0: mean of all density
   1: mean of sphere surface density at rmax
   2: mean of cylinder surface density at rmax
   6: mean of 2D Edge X=0 or N.x-1
-SD range : assign the voxels whose density is less than maen + range*SD as solvent range 
-density is stronger than -m