pdb2mrc2dWithCTF
Usage
Usage: pdb2mrc2dWithCTF
Options:
[-i[nput] In (NULL ).as(inFile ) ] :Essential :Input: PDB
[-o[utput] Out (NULL ).as(outFile ) ] :Essential :Output: MRC
[-N Nx (2048 ).as(Integer )
Ny (2048 ).as(Integer ) ] :Optional :Input: Nx Ny [pixel]
[-d dx (1.72 ).as(Real )
dy (1.72 ).as(Real ) ] :Optional :Input: dx dy [A]
[-Centre cx (0 ).as(Real )
cy (0 ).as(Real )
cz (0 ).as(Real ) ] :Optional :Input: CentreX CentreY [A]
[-n nx (64 ).as(Integer )
ny (64 ).as(Integer ) ] :Optional :Input: nx ny for subimage [pixel]
[-kV kV (200. ).as(Real ) ] :Optional :kV
[-Cs Cs (1.7 ).as(Real ) ] :Optional :Cs
[-d[e]f[ocus] Defocus (10000 ).as(Real ) ] :Optional :Defocus [A] at z = 0
[-A[overP] AoverP (0.07 ).as(Real ) ] :Optional :AoverP
[-Ain Ain (0.2 ).as(Real ) ] :Optional :Beta: IlluminationAngle [mrad]
[-ctfMode ctfMode (33 ).as(Integer ) ] :Optional :ctfMode
[-E[uler]A[ngle] EulerAngle (XEYS ).as(String )
Rot1 (0 ).as(Real )
Rot2 (0 ).as(Real )
Rot3 (0 ).as(Real ) ] :Optional :EulerAngle: [degree]
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
----- Additional Usage -----