mrcImageMultiCTFCompensation
Usage
Usage: mrcImageMultiCTFCompensation
Options:
[-i[nput] In (stdin ).as(inFileList ) ] :Essential :Input: filename ...
[-info2 CTF (stdin ).as(inFileList ) ] :Optional :InputFileList: the same order as the input: ctfinfo from Display2/ctfDisplay
[-o[utput] Out (stdout ).as(outFile ) ] :Essential :OutputDataFile(average file)
[-f[ft] fftOut (stdout ).as(outFile ) ] :Optional :OutputDataFile(averaged fft file)
[-W[hiteNoise] WhiteNoise (1.0 ).as(Real ) ] :Optional :
[-W[hiteNoise]R[aising]WhiteNoiseRaising (1.0 ).as(Real ) ] :Optional :Weight:W*exp(WR*R)
[-maxW[hiteNoise]R[aising]MaxWhiteNoise (1.0 ).as(Real ) ] :Optional :max(W*exp(WR*R),maxWhiteNoise)
[-Ndep[endent]W[hiteNoise]R[aising]NdependentWhiteNoise(1 ).as(Integer ) ] :Optional :W*exp(WR*R)/sqrt(N)
[-SinWin SinWinRmin (0.1 ).as(Real )
SinWinRmax (1.0 ).as(Real ) ] :Optional :Windowing by sine function from Rmin[/A] to Rmax[/A]
[-MaxIter[ation] MaxIter (10 ).as(Integer ) ] :Optional :Max Iteration
[-ctfMode CTFMode (1 ).as(Integer ) ] :Optional :CTFMode: refer to mrcImageCTFObservation
[-solventMode solventMode (0 ).as(Real ) ] :Optional :If solvent flatterning is used, NEED
[-solventSTD solventSTD (-1.0 ).as(Real ) ] :Optional :If solvent flatterning is used as mode=1, NEED
[-log[file] Log (stderr ).as(outFile ) ] :Optional :Log File Name
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
----- InputFileFormat -----
filename0 deltaF[A] Cs[mm] kV[kV] ratioOfAmpToPhase
filename1 deltaF[A] Cs[mm] kV[kV] ratioOfAmpToPhase
.................
----- Input: ctfinfo, with the same order as the input; from Display2/ctfDisplay -----
filename0.ctfinfo
filename1.ctfinfo
.................
mode: 0 : CTF-weighted compensation, CTF/(SQR(CTF) + (NS)^2)
mode: +1 : Adding solvent-flattening process
mode: +16: Without phase flipping, in case of images after phase only correction.