mrcImageAutoRotationAverage
Usage
Usage: mrcImageAutoRotationAverage
Options:
[-i[nput] In (stdin ).as(inFileList::mrcImage) ] :Essential :Input: Ins
[-r[eferenc] Ref (NULL ).as(inFile::mrcImage ) ] :Optional :Input: Ref
[-o[utput] Out (NULL ).as(outFile::mrcImage ) ] :Essential :Output:Average
[-range Min (0.0 ).as(Real )
Max (360.0 ).as(Real )
Delta (5.0 ).as(Real )
Iter (2 ).as(Integer ) ] :Optional :Mode
[-iter iter (2 ).as(Integer ) ] :Optional :iteration for rotation
[-M[odeCorrelation] CorMode (16 ).as(Integer ) ] :Optional :Mode: Correlation
[-Method[Correlation]Method (0 ).as(Integer ) ] :Optional :Method: Correlation
[-Periodic ] :Optional :Periodic
[-maxIter[aration] maxIter (10 ).as(Integer ) ] :Optional :MaxIteration
[-rmsd rmsd (1e-2 ).as(Real ) ] :Optional :rmsd
[-log Log (stdout ).as(outFile::ASCII ) ] :Optional :logFile
[-thres[hold] Thres (0.2 ).as(Real ) ] :Optional :threshold: Linear Correlation
[-c[onfig] configFile (NULL ).as(inFile ) ] :Optional :ConfigurationFile
[-m[ode] mode (0 ).as(Integer ) ] :Optional :Mode
----- Additional Usage -----
----- -Mode -----
0: Normal Correlation FxG*
1: Phase Correlation FxG*/ |FxG*|
2: Phase Correlation FxG*/sqrt(|FxG*|)
3: Normalized Normal Correlation FxG*/|F||G|)
16: (0,0) = 0
Refinement Correlation Map
0: sqrt(Sum |Fi-Gi|^2 / Sum |Gi|^2)
1: Sum |Gi||phaseFi - phaseGi| / Sum |Gi|
2: sqrt(Sum |Gi||phaseFi - phaseGi|^2 / Sum |Gi| )