mrcImageShapeSearch

Usage

Usage: mrcImageShapeSearch
Options:
    [-i[nput]            In                  (NULL      ).as(inFile::mrcImage    ) ] :Essential :Input
    [-o[utput]           Out                 (NULL      ).as(outFile::mrcImage   ) ] :Essential :Output
    [-Shape              Shape               (NULL      ).as(outFile::mrcImage   ) ] :Optional  :Output
    [-n[Cube]            nCube               (0         ).as(Integer             ) ] :Optional  :Mode
    [-Refine                                                                       ] :Optional  :Refine
    [-r[adius]           minR                (3         ).as(Integer             ) 
                         maxR                (5         ).as(Integer             ) 
                         delR                (1         ).as(Integer             ) ] :Optional  :Radius[pixel]
    [-l[ength]           minL                (3         ).as(Integer             ) 
                         maxL                (5         ).as(Integer             ) 
                         delL                (1         ).as(Integer             ) ] :Optional  :Length[pixel]
    [-Phi                minPhi              (0.0       ).as(Real                ) 
                         maxPhi              (359.0     ).as(Real                ) 
                         delPhi              (45.0      ).as(Real                ) ] :Optional  :around z-axis[degree]
    [-Theta              minTheta            (0.0       ).as(Real                ) 
                         maxTheta            (359.0     ).as(Real                ) 
                         delTheta            (45.0      ).as(Real                ) ] :Optional  :around x-axis[degree]
    [-Psi                minPsi              (0.0       ).as(Real                ) 
                         maxPsi              (350.0     ).as(Real                ) 
                         delPsi              (45.0      ).as(Real                ) ] :Optional  :around x-axis[degree]
    [-thres[Zscore]      thresZscore         (1.0       ).as(Real                ) ] :Optional  :Zscore
    [-interp[olationMode]interpMode          (0         ).as(Integer             ) ] :Optional  :interpMode
    [-O[utput]V[ector]BILDOutVectorBILD       (NULL      ).as(outFile::BILD       ) ] :Optional  :Output:BILD-vector
    [-O[utput]V[ector]   OutVector           (NULL      ).as(String              ) ] :Optional  :Output:vector basename
    [-arrow[Shape]       ArrowR1             (0.1       ).as(Real                ) 
                         ArrowR2             (0.4       ).as(Real                ) 
                         ArrowRho            (0.75      ).as(Real                ) ] :Optional  :ArrowShape
    [-zoom[Vector]       ZoomVector          (1.0       ).as(Real                ) ] :Optional  :Zoom
    [-arrowColorDisk     ArrowColorDisk0     (0.0       ).as(Real                ) 
                         ArrowColorDisk1     (1.0       ).as(Real                ) 
                         ArrowColorDisk2     (0.0       ).as(Real                ) ] :Optional  :ArrowColorDisk
    [-arrowColorSylinder ArrowColorSylinder0 (1.0       ).as(Real                ) 
                         ArrowColorSylinder1 (0.0       ).as(Real                ) 
                         ArrowColorSylinder2 (0.0       ).as(Real                ) ] :Optional  :ArrowColorSylinder
    [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
    [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
----- Additional Usage -----
0: Cylinder with radius and length
1: Disk with radius and length(thickness)
2: Sphere with radius