Package Download_score mdqc 109 MSnbase 3351 BrainStars 20 GlobalAncova 1120 clusterProfiler 18700 CGEN 70 Rbowtie 515 fabia 191 hiAnnotator 114 triplex 73 SNAGEE 64 CSAR 86 les 102 omicade4 172 deepSNV 165 iClusterPlus 379 flowType 21 BiGGR 75 timecourse 84 goseq 1290 GSCA 67 EDASeq 1805 flowMeans 164 Rgraphviz 9918 affy 8310 AnnotationForge 2321 BiocParallel 41850 DEXSeq 1517 genefilter 12720 GenomicFeatures 20237 gmapR 181 Gviz 3882 IRanges 52516 preprocessCore 14253 VariantTools 177 PANR 63 DOSE 18340 AnnotationDbi 36480 cn.mops 266 BHC 85 illuminaio 3009 MLInterfaces 438 BSgenome 16702 Biobase 48556 biocViews 4337 GEOmetadb 255 flowUtils 45 MMDiff 13 TargetSearch 80 synapter 144 MIMOSA 29 flowCore 2888 BioMVCClass 71 made4 272 ReactomePA 2493 ASSET 114 MVCClass 108 BCRANK 82 MEDME 63 mmnet 13 piano 475 PSICQUIC 28 cisPath 62 sigPathway 35 OmicCircos 189 metaMS 143 CoCiteStats 67 fastseg 768 RIPSeeker 31 GOFunction 22 Roleswitch 20 RNAither 24 geneRecommender 66 seqCNA 43 chimera 25 ProCoNA 16 ssviz 63 coRNAi 17 GeneOverlap 484 daMA 66 jmosaics 10 flowCL 23 CNORfuzzy 77 GenomeGraphs 28 DFP 73 BiocCaseStudies 23 snpStats 2283 frmaTools 86 affycomp 104 unifiedWMWqPCR 48 TitanCNA 88 UniProt.ws 426 metaSeq 75 RTCA 69 BicARE 143 epigenomix 70 ChemmineR 830 CNAnorm 73 Sushi 60 sva 7400 genomeIntervals 188 affypdnn 23 wateRmelon 802 topGO 3032 clonotypeR 24 GLAD 224 annaffy 277 Resourcerer 9 Clomial 62 ChIPpeakAnno 1039 EBImage 2719 cleanUpdTSeq 113 PAPi 22 ReQON 47 ChAMP 613 nucleR 87 networkBMA 22 RankProd 296 spikeLI 56 ensemblVEP 166 GSVA 6453 ChemmineOB 318 DMRforPairs 27 rsbml 159 MotifDb 668 flowTrans 97 ITALICS 70 deltaGseg 63 ontoCAT 14 MSstats 503 BufferedMatrixMethods 71 hyperdraw 123 asmn 5 motifStack 732 flagme 64 GSAR 105 CAGEr 185 affyQCReport 29 SJava 6 CMA 124 BioNet 284 gene2pathway 7 HilbertVisGUI 45 BeadDataPackR 640 weaver 71 ReportingTools 687 ArrayTV 21 ssize 102 SwimR 14 Rolexa 13 proteinProfiles 58 LVSmiRNA 20 exomePeak 23 AgiMicroRna 143 exonmap 6 rBiopaxParser 172 ADaCGH2 84 AffyCompatible 33 BufferedMatrix 100 cycle 72 IsoGeneGUI 22 anota 95 roar 69 DECIPHER 2891 MLSeq 165 cosmo 5 GeneticsPed 108 ENVISIONQuery 18 MiChip 63 AffyExpress 23 ddgraph 15 girafe 101 prebs 79 tilingArray 153 TurboNorm 73 clstutils 65 CNEr 3424 TFBSTools 3442 procoil 68 ecolitk 77 hexbin 24 MLP 159 ExiMiR 68 TDARACNE 23 ccrepe 107 tRanslatome 179 KCsmart 72 Ringo 285 mBPCR 67 ampliQueso 15 genomes 82 iSeq 59 lol 14 lpNet 79 ChromHeatMap 132 mitoODE 17 COHCAP 54 GRENITS 64 antiProfiles 71 CNORdt 72 cnvGSA 75 CoGAPS 315 keggorthology 198 GeneSelectMMD 113 ontoTools 8 PWMEnrich 203 QuasR 360 NormqPCR 168 edd 7 limmaGUI 87 Mfuzz 1270 spade 13 Agi4x44PreProcess 8 GSReg 70 netbiov 34 interactiveDisplayBase 8971 metabomxtr 63 miRNAtap 162 compEpiTools 77 methylPipe 136 Rnits 61 GOexpress 90 RUVnormalize 76 rRDP 72 CoRegNet 41 regionReport 136 EnrichmentBrowser 591 CFAssay 56 kebabs 151 mygene 344 proBAMr 61 Rqc 268 polyester 125 ASGSCA 66 geecc 13 GenomicInteractions 395 GenoView 3 MBASED 62 OncoSimulR 66 PAA 73 pepStat 58 SNPRelate 1627 tracktables 144 FEM 24 SGSeq 324 snpMatrix 11 genomation 673 pgUtils 5 xmapcore 4 pairseqsim 3 GeneRfold 4 Seqnames 0 gff3Plotter 2 GeneticsBase 5 gQTLstats 16 mdgsa 13 affydata 3 TRONCO 79 arrayQCplot 2 iPAC 138 logicFS 94 msmsTests 277 maanova 30 PROcess 98 DeconRNASeq 244 hypergraph 172 GWASTools 610 easyRNASeq 194 OCplus 89 gaia 28 NTW 63 NetSAM 95 ChIPsim 91 gcrma 1334 viper 718 BEAT 69 SamSPECTRAL 155 INPower 69 Rsamtools 23929 bumphunter 2833 DESeq2 21745 ggbio 2151 limma 32383 minfi 2451 annotate 18029 seqLogo 3795 mzR 3448 pcaMethods 5371 mzID 3209 Category 1875 genoset 27 ExpressionView 23 BiocCheck 1649 zlibbioc 53113 DESeq 182 widgetTools 1313 DynDoc 1307 ShortRead 6338 CNTools 141 pdInfoBuilder 125 copa 68 DriverNet 64 isobar 91 Rdisop 440 IPPD 19 genefu 423 ArrayExpressHTS 24 domainsignatures 18 VariantFiltering 97 macat 50 SIM 70 MassSpecWavelet 1945 altcdfenvs 128 RbcBook1 112 RefNet 17 CGHbase 436 iBMQ 53 GeneMeta 112 biovizBase 5510 metahdep 64 flowViz 1051 fdrame 69 HELP 66 Icens 480 BitSeq 28 trio 109 PADOG 291 quantsmooth 625 pathifier 112 ARRmNormalization 72 sagenhaft 64 xps 21 SBMLR 75 scsR 18 CSSP 24 GGBase 27 multiscan 64 minet 820 CorMut 18 affycoretools 400 graphite 3068 DirichletMultinomial 4794 miRNApath 72 beadarray 732 RDAVIDWebService 37 BayesPeak 23 vbmp 93 DEGreport 614 h5vc 97 rpx 303 Rcpi 121 RNASeqPower 159 TSSi 20 Vega 17 twilight 117 Rariant 21 tigre 84 plgem 121 rbsurv 79 a4 95 GeneRegionScan 74 COMPASS 87 eiR 73 MassArray 59 pkgDepTools 30 OLIN 103 splicegear 19 STRINGdb 1202 puma 108 SplicingGraphs 98 pickgene 59 HTqPCR 148 CoverageView 74 SeqArray 929 TypeInfo 61 trackViewer 523 bioDist 263 ACME 98 mgsa 113 rama 22 ChIPseqR 95 spotSegmentation 18 segmentSeq 82 PCpheno 22 PECA 71 LPE 98 CAFE 81 RDRToolbox 137 SeqGSEA 192 HDTD 53 crlmm 287 phyloseq 5553 AnnotationFuncs 24 arrayQuality 139 globaltest 1915 flowPhyto 8 ctc 284 CNVtools 18 SAGx 27 HTSFilter 222 bgafun 19 bioassayR 81 codelink 87 BioSeqClass 22 RchyOptimyx 20 SimBindProfiles 54 biocGraph 218 flowBeads 71 messina 64 paircompviz 68 BiSeq 151 snm 173 imageHTS 30 spkTools 64 flowMap 46 BaseSpaceR 73 HTSanalyzeR 24 PLPE 66 monocle 3169 PING 82 joda 18 pcaGoPromoter 19 pvac 65 HEM 66 cghMCR 80 CORREP 49 customProDB 96 iterativeBMA 70 REDseq 100 idiogram 71 MiPP 72 eisa 22 qrqc 29 dks 58 qcmetrics 106 plrs 17 webbioc 74 flowFlowJo 11 oposSOM 92 rqubic 91 RTopper 69 a4Base 161 GOSim 109 CRISPRseek 167 iChip 66 NCIgraph 120 GEOsubmission 73 triform 22 r3Cseq 93 Repitools 300 birta 22 aCGH 226 gCMAPWeb 18 cobindR 19 pcot2 23 ArrayExpress 444 beadarraySNP 53 ChIPXpress 95 clst 98 spliceSites 19 OLINgui 66 geNetClassifier 154 IdMappingRetrieval 20 prada 31 ReadqPCR 213 rfPred 63 RWebServices 7 SeqVarTools 449 spliceR 19 cosmoGUI 6 Pviz 84 riboSeq 0 biocDatasets 4 shinyMethyl 119 fbat 5 Rdbi 8 rflowcyt 6 pamr 8 missMethyl 1001 quantro 360 switchBox 123 FourCSeq 14 MSGFplus 17 derfinderHelper 576 PSEA 44 GenomicTuples 59 derfinder 578 csaw 594 groHMM 81 facopy 8 ALDEx2 1197 COSNet 58 exonfindR 0 IMPCdata 53 MSnID 295 STATegRa 66 paxtoolsr 98 flowCHIC 66 Ruuid 7 GeneGroupAnalysis 4 simulatorAPMS 4 RMAGEML 5 nethet 73 pxr 0 PROPER 93 FlowSOM 1111 maCorrPlot 63 RGalaxy 23 gpls 223 hopach 342 MinimumDistance 92 DMRcate 932 Mirsynergy 16 adSplit 83 metaseqR 24 affyPLM 1132 flowQB 23 DART 71 edgeR 23470 BADER 71 SLGI 26 reb 20 shinyTANDEM 17 seqbias 74 graph 18943 SSPA 75 microRNA 164 casper 70 DNAcopy 5169 rtracklayer 21641 BiocStyle 6243 BRAIN 125 cellGrowth 18 flowFP 169 bgx 77 impute 10628 Biostrings 47371 BiocInstaller 381 XVector 49077 BiocGenerics 57035 tkWidgets 1313 ROC 1083 baySeq 463 blima 64 IdMappingAnalysis 17 TargetScore 75 dyebias 71 RMassBank 111 rTANDEM 22 MEDIPS 119 Rsubread 2266 MBCB 62 SPEM 85 CRImage 90 BGmix 22 plier 124 NuPoP 75 flowMatch 77 massiR 66 lapmix 63 HybridMTest 136 rGADEM 310 oligo 1695 dualKS 24 gaucho 15 DEDS 20 CNVrd2 71 ScISI 29 oneChannelGUI 24 gage 834 ChIPseeker 1843 ASSIGN 123 lmdme 64 tweeDEseq 153 GraphAlignment 66 affylmGUI 100 VanillaICE 237 flowPeaks 184 iASeq 59 R453Plus1Toolbox 86 GSEAlm 89 methylMnM 81 COPDSexualDimorphism 4 OSAT 85 AffyTiling 15 Cormotif 75 SMAP 48 GSRI 71 cancerclass 155 mosaics 162 RpsiXML 27 AllelicImbalance 108 CompGO 17 inSilicoMerging 17 pathview 4489 sapFinder 18 DEGseq 164 supraHex 476 fmcsR 276 npGSEA 70 interactiveDisplay 109 AnnotationHub 11715 parody 110 lumi 1202 OrderedList 85 genoCN 62 HCsnip 14 rnaSeqMap 23 LPEadj 43 Clonality 29 PREDA 90 ibh 62 maPredictDSC 67 openCyto 670 chroGPS 20 GeneGA 57 vtpnet 85 DASiR 11 MoPS 11 phenoTest 144 TEQC 84 MotIV 35 oligoClasses 1720 netresponse 80 flowWorkspace 1270 flowStats 515 RGSEA 74 MeSHDbi 266 chopsticks 100 RTN 181 GGtools 29 PathNet 74 Basic4Cseq 75 epivizr 138 DAVIDQuery 10 motifRG 20 ffpe 79 MineICA 84 meshr 148 msQC 0 EDDA 20 QUALIFIER 22 RedeR 338 CexoR 73 methyAnalysis 26 flowClean 206 simpleaffy 104 flowDensity 271 bigmemoryExtras 19 GeneSelector 20 charm 24 survcomp 1181 EBSeq 394 arrayMvout 74 clippda 74 panp 84 Genominator 24 CALIB 24 PGSEA 58 cellHTS 16 prot2D 15 virtualArray 8 SpacePAC 105 biosvd 19 XDE 82 convert 153 HiTC 142 HTSeqGenie 59 EBarrays 226 cqn 302 randPack 65 stepwiseCM 15 FRGEpistasis 63 iontree 17 GENE.E 15 SomatiCA 14 trigger 71 makecdfenv 187 a4Classif 125 CancerMutationAnalysis 22 MantelCorr 58 DTA 89 LMGene 21 manta 19 SpeCond 79 logitT 33 CNORode 96 DrugVsDisease 144 methVisual 20 plateCore 20 compcodeR 89 inSilicoDb 16 KEGGSOAP 11 nondetects 62 GraphPAC 110 ROntoTools 218 rols 466 DNaseR 6 SomaticSignatures 184 flowQ 16 RLMM 62 rHVDM 19 LiquidAssociation 93 MiRaGE 76 ASEB 71 Mulcom 80 maigesPack 47 biomvRCNS 72 CGHnormaliter 78 cn.farms 71 explorase 19 Rmagpie 76 gwascat 652 mcaGUI 21 nnNorm 67 pdmclass 18 RefPlus 47 rMAT 18 rSFFreader 13 SANTA 56 splots 215 sSeq 180 wavClusteR 69 MethylAid 99 DOQTL 13 cosmiq 112 GeneTraffic 5 PatientGeneSets 3 externalVector 6 MultiMed 61 GeneSpring 6 ballgown 662 STAN 19 AIMS 421 erccdashboard 83 GeneR 8 systemPipeR 1190 TSCAN 657 riboSeqR 64 simulatorZ 13 IdeoViz 74 MSGFgui 14 EBSeqHMM 43 focalCall 10 metagene 29 pepXMLTab 65 seqplots 18 GOsummaries 49 Metab 71 RdbiPgSQL 5 stam 4 keggorth 4 Rredland 3 gespeR 89 GeneTS 4 CGHcall 398 bridge 23 CopyNumber450k 9 PhenStat 66 bsseq 1469 MCRestimate 21 flowFit 20 GeneAnswers 28 sscore 34 msmsEDA 289 dexus 24 SCAN.UPC 159 flowClust 825 AtlasRDF 11 htSeqTools 22 GEOquery 9483 sangerseqR 941 apComplex 78 agilp 99 RPA 113 GenomicAlignments 24378 GenomicRanges 44170 VariantAnnotation 12351 SRAdb 429 GenomeInfoDb 58312 CellNOptR 197 GOstats 1705 GSEABase 8971 GenomicFiles 1333 biomaRt 23711 multtest 12651 siggenes 3498 goTools 73 vsn 5282 pRoloc 268 MeasurementError.cor 61 rTRM 178 S4Vectors 56916 geneplotter 6255 chipseq 640 clipper 103 SPIA 645 RBGL 9505 xcms 1890 hpar 275 GOTHiC 85 staRank 68 AGDEX 74 NetPathMiner 65 goProfiles 135 GeneExpressionSignature 90 FGNet 119 annotationTools 136 LBE 227 VegaMC 62 HilbertVis 189 TCC 212 stepNorm 64 maskBAD 69 Rtreemix 72 matchBox 62 ABSSeq 126 flipflop 18 GraphAT 77 PAnnBuilder 21 DSS 877 RamiGO 15 factDesign 72 Streamer 72 NOISeq 602 HMMcopy 293 ddCt 99 BAC 22 RUVSeq 941 nudge 15 qpcrNorm 75 metagenomeSeq 1696 dagLogo 92 coGPS 66 EBcoexpress 83 KEGGprofile 28 attract 86 marray 1932 plethy 27 geneRxCluster 71 SNPchip 28 RSVSim 72 ncdfFlow 1135 GeneticsDesign 20 cellHTS2 228 affyILM 90 Risa 146 CAMERA 506 NarrowPeaks 21 PROMISE 112 iBBiG 128 clusterStab 89 QDNAseq 378 qvalue 17557 alsace 18 flowPlots 65 methylumi 1522 flowMerge 148 ternarynet 61 Starr 21 DBChIP 23 MethylSeekR 143 Harshlight 82 intansv 87 fastLiquidAssociation 63 FunciSNP 20 diffGeneAnalysis 65 EasyqpcR 19 RBioinf 72 exomeCopy 285 betr 16 KEGGREST 37033 categoryCompare 82 CGHregions 94 affyContam 129 gaga 115 affyio 8354 affxparser 1630 KEGGgraph 5610 annmap 119 rTRMui 67 tspair 24 ConsensusClusterPlus 3056 RNAinteract 86 a4Preproc 183 OrganismDbi 3216 UNDO 72 a4Reporting 123 occugene 59 inveRsion 19 sizepower 77 genArise 66 predictionet 18 GEWIST 57 phenoDist 16 ELBOW 18 SQUADD 46 DiffBind 1083 cummeRbund 237 frma 154 rhdf5 20040 ArrayTools 26 MANOR 68 aroma.light 2003 Heatplus 455 RCytoscape 16 safe 654 MergeMaid 24 metaArray 22 GOSemSim 17389 copynumber 133 qpgraph 189 arrayQualityMetrics 485 sigaR 20 maSigPro 263 DEGraph 72 SLqPCR 72 gprege 19 iterativeBMAsurv 61 OTUbase 72 RmiR 21 hapFabia 67 xmapbridge 64 ABarray 93 RMAPPER 7 RCASPAR 58 PICS 124 farms 46 qusage 405 sRAP 19 DupChecker 8 savR 25 yaqcaffy 22 gCMAP 21 OutlierD 23 pvca 251 pathRender 74 a4Core 175 ChIPQC 366 BUS 67 neaGUI 9 nem 26 pRolocGUI 94 ppiStats 26 CNORfeeder 79 cleaver 211 pint 16 Rcade 25 snapCGH 104 MmPalateMiRNA 22 flowBin 74 BAGS 77 chipenrich 165 flowCyBar 60 affyPara 25 AffyRNADegradation 71 BiRewire 130 TransView 64 gaggle 49 GeneNetworkBuilder 84 plw 22 Rchemcpp 17 RRHO 95 SigFuge 67 waveTiling 22 maDB 7 Pbase 14 iFlow 4 makePlatformDesign 5 Polyfit 14 MEIGOR 62 mQTL.NMR 9 ClassifyR 345 M3D 12 hiReadsProcessor 72 proteoQC 13 MethylMix 100 SemDist 56 matchprobes 4 rain 98 MGFM 68 NGScopy 10 derfinderPlot 153 SigCheck 65 mvGST 7 seqTools 125 BridgeDbR 83 MAIT 108 MBAmethyl 47 flowcatchR 74 MPFE 51 specL 66 ToPASeq 12 RTools4TB 3 SemSim 4 Rintact 3 arrayMagic 4 RSNPper 4 AnnBuilder 5 SAGElyzer 4 cpvSNP 65 rgsepd 55 gQTLBase 17 saps 3 iSPlot 3 BeadExplorer 3 QuartPAC 67 AnalysisPageServer 11 ChromoViz 4 seqPattern 734 CODEX 115 ChIPComp 70 CAnD 14 FISHalyseR 56 birte 9 Imetagene 11 dupRadar 119 RCy3 967 RareVariantVis 68 SIMAT 62 podkat 67 EnrichedHeatmap 575 Prostar 87 DAPAR 142 lfa 292 ENCODExplorer 12 erma 103 caOmicsV 10 EMDomics 77 Path2PPI 64 OperaMate 4 BEclear 77 SVM2CRM 9 GENESIS 358 AnnotationHubData 371 TIN 57 TPP 105 SICtools 51 RCyjs 78 FlowRepositoryR 14 goCluster 1 hierGWAS 66 GEOsearch 5 R4RNA 642 mAPKL 17 traseR 60 globalSeq 58 BrowserVizDemo 4 rCGH 119 INSPEcT 75 diffHic 112 exprExternal 1 dcGSA 57 systemPipeRdata 0 TimerQuant 0 biobroom 211 canceR 100 chromDraw 63 TarSeqQC 17 SISPA 22 MEAL 88 CNPBayes 9 rcellminer 77 motifbreakR 215 genotypeeval 20 GUIDEseq 86 cogena 90 DNABarcodes 170 LedPred 51 mogsa 206 pmm 63 sbgr 2 seq2pathway 170 XBSeq 13 ABAEnrichment 15 CopywriteR 30 acde 71 scde 363 soGGi 349 muscle 336 IONiseR 81 GoogleGenomics 8 variancePartition 952 sincell 66 pandaR 132 destiny 681 NanoStringQCPro 36 RTCGAToolbox 557 Rhtslib 25065 rnaseqcomp 68 similaRpeak 65 mirIntegrator 73 immunoClust 73 HIBAG 128 FamAgg 81 pwOmics 162 normalize450K 55 SWATH2stats 64 SummarizedExperiment 39016 ggtree 20908 applera 2 iSNetwork 3 bim 2 GenomeBase 2 reposTools 2 rfcdmin 2 SNAData 2 lpsymphony 1029 kimod 8 myvariant 89 diggit 60 DeMAND 54 metagenomeFeatures 13 iCheck 62 bamsignals 1079 NanoStringDiff 94 cytofkit 24 miRLAB 78 BBCAnalyzer 65 IVAS 85 CNVPanelizer 68 ensembldb 10209 skewr 54 conumee 165 GreyListChIP 1017 iGC 63 ELMER 180 PGA 14 OGSA 10 metaX 3 RiboProfiling 97 RUVcorr 63 RNAprobR 11 DiffLogo 71 ProtGenerics 11977 RnBeads 292 netbenchmark 11 SEPA 8 Prize 10 synlet 54 flowVS 105 RBM 65 MatrixRider 68 BubbleTree 79 fCI 59 RnaSeqSampleSize 101 subSeq 73 pathVar 23 y2hStat 2 iCOBRA 214 BioQC 125 biomformat 5590 transcriptR 77 profileScoreDist 54 ENmix 239 ropls 1240 consensusSeekeR 103 ldblock 92 Guitar 134 regioneR 2017 LOLA 298 OmicsMarkeR 10 DChIPRep 13 gcatest 73 GeneBreak 70 miRcomp 61 sigsquared 59 FindMyFriends 15 edge 105 LowMACA 19 SNPhood 67 gdsfmt 2065 parglms 56 Cardinal 191 LEA 527 Oscope 94 MeSHSim 5 gtrellis 135 DMRcaller 89 coMET 85 ProteomicsAnnotationHubData 14 R3CPET 61 HilbertCurve 98 RTCGA 560 msa 1610 TCGAbiolinks 3858 eudysbiome 54 SELEX 67 CausalR 68 ComplexHeatmap 14800 MethTargetedNGS 58 BrowserViz 174 rGREAT 665 sidap 0 InPAS 74 mtbls2 0 widgetInvoke 4 mmgmos 3 multiClust 93 CrispRVariants 140 ggcyto 890 GSALightning 56 splineTCDiffExpr 1 IHW 702 iCARE 144 PanVizGenerator 13 SMITE 63 Mergeomics 70 dada2 2268 contiBAIT 49 ExpressionAtlas 210 HDF5Array 13799 doppelgangR 180 SwathXtend 72 AneuFinder 94 scran 4823 DRIMSeq 309 debrowser 176 miRNAmeConverter 64 DEFormats 254 Linnorm 233 pbcmc 7 LymphoSeq 72 epivizrServer 147 MultiDataSet 1289 ImmuneSpaceR 56 Director 49 netprioR 53 covRNA 63 FunChIP 53 fgsea 17202 qsea 70 MODA 64 ImpulseDE 8 SNPediaR 56 ASAFE 59 geneplast 108 maftools 2552 MADSEQ 62 RCAS 148 CancerSubtypes 90 eegc 87 LINC 11 SIMLR 249 CancerInSilico 21 SPLINTER 66 MAST 2113 psichomics 79 fCCAC 63 StarBioTrek 46 flowPloidy 70 MoonlightR 86 GOpro 160 KEGGlincs 75 yamss 67 chimeraviz 113 samExploreR 10 cellTree 17 EmpiricalBrownsMethod 137 GenVisR 277 sevenbridges 71 ROTS 218 chromPlot 192 ExperimentHub 7619 garfield 62 Uniquorn 63 nucleoSim 61 psygenet2r 87 sscu 55 EBSEA 56 CountClust 15 BatchQC 110 QUBIC 147 pcaExplorer 463 BgeeDB 134 pqsfinder 107 epivizrData 139 oppar 69 dSimer 9 covEB 56 rDGIdb 82 AMOUNTAIN 100 MetCirc 81 methylKit 642 CVE 9 LOBSTAHS 102 esetVis 75 chromstaR 94 MGFR 72 switchde 61 geneAttribution 69 CellMapper 69 BaalChIP 66 geneXtendeR 113 uSORT 64 statTarget 101 MutationalPatterns 325 annotatr 480 HelloRanges 138 phosphonormalizer 53 MWASTools 164 IWTomics 72 clusterSeq 62 RJMCMCNucleosomes 63 QuaternaryProd 77 Chicago 96 SC3 376 BasicSTARRseq 63 RGraph2js 61 RImmPort 50 metaCCA 163 GenRank 8 MBttest 56 biosigner 98 DNAshapeR 82 bacon 111 GenoGAM 14 splineTimeR 75 MultiAssayExperiment 5911 GMRP 60 CONFESS 80 odseq 68 SpidermiR 73 recoup 63 genbankr 100 ClusterSignificance 62 BadRegionFinder 64 InteractionSet 1940 Harman 178 CHRONOS 67 PureCN 167 bioCancer 79 msPurity 82 Pigengene 125 GEM 62 NetCRG 0 sights 60 crossmeta 180 ctsGE 64 GeneGeneInteR 61 IPO 159 BayesKnockdown 61 SVAPLSseq 9 GAprediction 64 Anaquin 62 PharmacoGx 273 signeR 82 readat 10 Pi 64 DEsubs 63 FitHiC 73 regsplice 58 SRGnet 10 meshes 157 crisprseekplus 31 PathoStat 123 BPRMeth 104 GRridge 16 RnaSeqGeneEdgeRQL 2 scDD 139 scone 115 treeio 20024 tofsims 12 flowAI 559 JunctionSeq 16 clustComp 68 EWCE 197 tximport 3421 scater 7196 cellity 69 ExperimentHubData 298 MethPed 60 EpiCluster 0 PCAN 63 OncoScore 71 Glimma 1184 isomiRs 174 genphen 12 ISoLDE 49 CINdex 73 EGSEA 189 diffloop 30 EGAD 70 epivizrStandalone 68 MMDiff2 58 normr 139 ccmap 84 CytoML 459 clusterExperiment 344 DeepBlueR 39 ASpli 108 recount 406 alpine 37 GRmetrics 90 YAPSA 92 gCrisprTools 66 philr 180 MetaboSignal 130 BiocWorkflowTools 176 synergyfinder 206 bigmelon 71 yarn 136 anamiR 9 TVTB 70 CCPROMISE 68 M3Drop 663 matter 224 proFIA 17 DelayedArray 42402 sparseDOSSA 33 ramwas 131 BUMHMM 86 gcapc 61 coseq 147 TCseq 187 ChIPexoQual 73 splatter 464 REMP 75 MIGSA 17 EventPointer 73 hicrep 12 motifcounter 63 twoddpcr 61 AnnotationFilter 10994 STROMA4 30 BioCor 84 methylInheritance 68 semisup 54 ATACseqQC 376 GA4GHshiny 71 TReNA 2 ndexr 73 miRBaseConverter 104 methInheritSim 75 motifmatchr 1358 Scale4C 68 DASC 2 Rhdf5lib 24393 scmap 244 phenopath 91 BiocSklearn 76 epivizrChart 66 RVS 56 TFHAZ 60 InterMineR 93 panelcn.mops 85 multiMiR 235 ChIPanalyser 69 AUCell 2348 methyvim 11 openPrimeRui 65 rhdf5client 158 ontoProc 279 TnT 36 runibic 80 SeqSQC 140 tenXplore 51 oncomix 56 stageR 181 vulcan 71 iterClust 43 iranges 1 biostrings 1 discordant 86 karyoploteR 858 TCGAbiolinksGUI 27 MCbiclust 60 sampleClassifier 71 GISPA 41 multiOmicsViz 41 NADfinder 67 epiNEM 153 RIVER 59 ImpulseDE2 15 IMAS 64 RaggedExperiment 922 GenomicScores 708 CATALYST 558 pgca 52 RITAN 76 IsoformSwitchAnalyzeR 265 RTNsurvival 66 scoreInvHap 65 OPWeight 57 GENIE3 1202 rexposome 105 zFPKM 112 DEP 514 Onassis 13 HiCcompare 277 cytolib 2776 SPONGE 53 Rbowtie2 301 apeglm 3567 MSstatsQC 84 TMixClust 76 BASiCS 165 annbuilder 0 scfind 8 DelayedMatrixStats 16287 methimpute 67 JASPAR2018 3 PathwaySplice 9 chromVAR 1150 openPrimeR 160 topdownr 81 scPipe 140 pcxn 52 anota2seq 83 bnbc 174 loci2path 64 TFEA.ChIP 77 MAGeCKFlute 378 mimager 71 funtooNorm 67 POST 10 mapscape 55 DaMiRseq 126 BiocFileCache 26537 BioMedR 4 cydar 96 BLMA 76 cellbaseR 84 biotmle 64 wiggleplotr 179 msgbsR 69 zinbwave 947 RProtoBufLib 2736 consensusOV 124 ClusterJudge 62 IrisSpatialFeatures 5 DMCHMM 58 Doscheda 67 microbiome 1705 M3C 705 miRmine 41 MIRA 121 progeny 434 slalom 150 mpra 67 flowclust 0 bcSeq 65 MetaNeighbor 95 signet 8 bsgenome 0 shortread 0 GOfuncR 337 biocinstaller 2 DMRScan 52 swfdr 70 goSTAG 68 RTNduals 90 geneClassifiers 54 timescape 82 cellscape 54 Logolas 11 MaxContrastProjection 11 IntEREst 78 branchpointer 86 Organism.dplyr 434 rqt 51 GA4GHclient 115 netReg 9 GenomicDataCommons 1157 flowTime 69 banocc 85 basecallQC 72 pathprint 9 metavizr 16 PPInfer 176 ideal 104 TSRchitect 15 heatmaps 291 coexnet 15 mfa 94 beachmat 15753 SingleCellExperiment 15346 oneSENSE 22 diffuStats 76 EpiDISH 631 SCnorm 110 CEMiTool 142 IntramiRExploreR 56 miRsponge 8 seqcombo 60 TFARM 55 amplican 90 trena 29 seqCAT 69 cbaf 68 rhvdm 0 chromswitch 22 restfulSE 144 transcriptogramer 69 affyplm 0 MetaCyto 81 PROPS 59 esATAC 94 ANF 57 ivygapSE 57 gep2pep 58 omicsPrint 65 LineagePulse 36 biobase 1 geoquery 1 DropletUtils 2612 RGMQL 54 Trendy 64 RcisTarget 870 omicplotR 64 ChIPSeqSpike 12 kissDE 67 Rgin 9 iSEE 471 martini 61 DominoEffect 65 GSEABenchmarkeR 86 TissueEnrich 212 PowerExplorer 9 mdp 58 rWikiPathways 400 SparseSignatures 63 ccfindR 96 CytoDx 80 iCNV 66 SEPIRA 24 RNAdecay 44 GDSArray 192 SIAMCAT 126 onlineFDR 48 kmknn 0 topgo 0 MetID 57 GeneAccord 11 coRdon 183 tximeta 1121 HPAanalyze 130 NormalyzerDE 173 hierinf 47 countsimQC 239 OMICsPCA 68 FCBF 44 levi 50 LoomExperiment 619 IsoCorrectoR 118 MTseeker 4 PrecisionTrialDrawer 9 snpmatrix 1 scFeatureFilter 55 omicRexposome 65 GDCRNATools 307 drawProteins 211 BiFET 63 CTDquerier 60 gsean 66 iteremoval 11 DEComplexDisease 13 BEARscc 60 CellScore 59 ddPCRclust 78 TTMap 61 scmeth 73 MDTS 53 GeneStructureTools 88 adaptest 7 IMMAN 55 ASICS 94 BioNetStat 84 RandomWalkRestartMH 99 BiocOncoTK 80 OmaDB 243 ORFik 200 sigFeature 228 iasva 69 FastqCleaner 87 gwasurvivr 96 icetea 60 sesame 791 slinky 8 mlm4omics 4 NBSplice 12 BUScorrect 57 MetNet 58 consensus 54 brainImageR 3 EnhancedVolcano 4509 celaref 75 nuCpos 55 XINA 48 BiocPkgTools 154 plotGrouper 53 FoldGO 33 primirTSS 61 breakpointR 65 cicero 218 QSutils 98 HIREewas 54 ExCluster 48 AffiXcan 61 gpart 18 NeighborNet 22 Wrench 1686 cTRAP 74 consensusDE 71 BDMMAcorrect 31 TimeSeriesExperiment 12 AssessORF 114 gostats 1 category 1 rgraphviz 2 bayseq 1 cntools 1 VCFArray 66 edger 1 logitt 1 mCSEA 111 CHARGE 8 pogos 64 srnadiff 66 enrichplot 17867 MetaGxOvarian 3 dmrseq 212 FELLA 133 perturbatr 9 phantasus 201 decontam 1708 singleCellTK 294 SummarizedBenchmark 45 igvR 119 hipathia 178 singscore 1413 sevenC 57 RSeqAn 99 CAGEfightR 218 InTAD 61 MSstatsQCgui 49 slingshot 1493 Rmmquant 61 CellTrails 61 CAMTHC 5 methylGSA 120 ipdDb 160 appreci8R 97 scruff 73 LRBaseDbi 125 DEqMS 234 miRSM 48 SIMD 56 sparsenetgls 52 annotationdbi 1 RNASeqR 10 ProteoMM 84 artMS 84 compartmap 34 tRNAdbImport 121 COCOA 80 HiCBricks 151 MPRAnalyze 72 rbgl 1 tkwidgets 1 genomicfeatures 1 dnacopy 1 rScudo 57 DelayedDataFrame 68 deco 12 plpe 0 seqlogo 0 roma 1 hmdbQuery 78 powerTCR 357 MACPET 13 GARS 65 vidger 116 tRNAscanImport 78 Sconify 60 DEScan2 73 diffcoexp 211 GateFinder 66 DEsingle 250 plyranges 1278 seqsetvis 83 ChIC 17 SDAMS 60 TFutils 86 diffcyt 422 missRows 57 TCGAutils 855 netSmooth 69 TxRegInfra 10 BiocVersion 60005 maser 133 Ularcirc 69 GIGSEA 50 qPLEXanalyzer 76 condcomp 4 OUTRIDER 212 ACE 94 strandCheckR 58 multiHiCcompare 169 INDEED 48 REBET 56 SCBN 91 ERSSA 63 BiocNeighbors 10757 glmSparseNet 191 bayNorm 87 mixOmics 2697 universalmotif 621 abseqR 63 tRNA 146 transite 67 PepsNMR 139 KinSwingR 58 MSstatsTMT 295 ADAM 170 decompTumor2Sig 137 IsoCorrectoRGUI 62 scTensor 128 DNABarcodeCompatibility 49 pkgdeptools 0 degseq 1 genomicranges 0 graper 55 cytofast 6 OVESEG 68 GAPGOM 11 cola 129 Melissa 56 rmelting 68 BioMM 15 atSNP 82 hypeR 96 CellBench 131 pram 60 DepecheR 71 pathwayPCA 79 AMARETTO 170 sitePath 60 OmicsLonDA 17 dcanr 146 enrichTF 63 animalcules 173 SynMut 54 mnem 158 RepViz 109 sRACIPE 68 StructuralVariantAnnotation 227 HCABrowser 6 arrayqualitymetrics 0 MMAPPR2 20 MetaVolcanoR 51 RNAmodR.ML 60 SBGNview 207 gemini 55 chippeakanno 0 circRNAprofiler 78 SCANVIS 65 HiLDA 76 proDA 246 IgGeneUsage 53 fcScan 67 VariantExperiment 51 sojourner 13 gseabase 0 flowSpecs 80 SEtools 186 ReactomeGSA 230 LinkHD 60 ALPS 6 SAIGEgds 92 blacksheepr 71 schex 231 DEWSeq 63 scDblFinder 1512 OmnipathR 565 fcoex 69 methrix 88 GmicR 68 gscreend 48 MEB 52 brainflowprobes 46 BiocSet 290 MBQN 60 cummerbund 1 ceRNAnetsim 51 iterativebmasurv 0 geneticsbase 0 RCM 67 arrayexpress 1 SpatialCPie 77 epihet 11 SMAD 54 Rcwl 108 BiocSingular 12457 alevinQC 87 fishpond 258 CNVRanger 122 miRspongeR 43 qckitfastq 71 PoTRA 9 proBatch 25 Structstrings 161 GNET2 54 batchelor 3949 survtype 57 TNBC.CMS 45 CellMixS 81 DeMixT 100 ngsReports 77 DiscoRhythm 68 scMerge 562 SubCellBarCode 60 metagene2 72 scRecover 59 profileplyr 227 netboost 46 gpuMagic 56 SQLDataFrame 55 RNAmodR 118 RNAmodR.AlkAnilineSeq 67 TOAST 397 scGPS 86 scBFA 62 AlphaBeta 58 Autotuner 8 MOSim 61 brendaDb 57 SingleR 4117 muscat 495 deltaCaptureC 56 gramm4R 5 idr2d 58 CrossICC 3 biscuiteer 73 ASpediaFI 9 CNVfilteR 65 MMUPHin 135 scPCA 93 scTGIF 198 HCAExplorer 5 DMCFB 56 mitch 65 geometadb 0 PAIRADISE 89 Rhisat2 227 adductomicsR 62 bigPint 24 topconfects 177 phemd 31 SpectralTAD 84 Modstrings 210 CoRegFlux 4 PrInCE 63 qsmooth 187 RcwlPipelines 106 CHETAH 98 evaluomeR 60 MOFA 7 pipeFrame 167 infercnv 1094 celda 731 TPP2D 57 VennDetail 251 ssrch 82 PAST 51 XCIR 7 KnowSeq 62 AWFisher 65 Maaslin2 1030 GenomicOZone 78 SigsPack 57 calm 47 SharedObject 159 microbiomeDASim 63 pwrEWAS 24 debCAM 64 methylCC 74 flowSpy 5 MethCP 9 oppti 49 RNAsense 50 ssPATHS 49 tradeSeq 515 MACSQuantifyR 46 MSstatsSampleSize 18 cliqueMS 128 selectKSigs 54 rsamtools 0 onechannelgui 0 CluMSID 70 PCAtools 1233 divergence 49 doseR 55 scds 516 projectR 111 mbkmeans 427 Xeva 118 BANDITS 117 lipidr 187 CopyNumberPlots 160 nanotatoR 93 GladiaTOX 54 TreeSummarizedExperiment 1800 scAlign 16 ADAMgui 99 HumanTranscriptomeCompendium 53 NBAMSeq 141 RNAmodR.RiboMethSeq 69 ViSEAGO 134 ncGTW 96 PhyloProfile 79 APAlyzer 76 BUSpaRse 210 Qtlizer 57 lionessR 57 Spaniel 82 waddR 54 target 59 PERFect 34 signatureSearch 233 GCSscore 20 peakPantheR 63 BioTIP 77 pulsedSilac 7 netboxr 10 biomart 0 widgettools 1 CSSQ 52 PubScore 6 packFinder 64 frenchFISH 45 BSgenome.Hsapiens.UCSC.hg19 7 DEXICA 0 vcfR 1 vasp 4 ribor 53 ribosomeProfilingQC 86 dittoSeq 1458 receptLoss 47 tscR 14 Dune 49 tidybulk 277 ROCpAI 48 BiocDockerManager 13 FRASER 117 MsCoreUtils 3739 spicyR 186 scry 236 SingleCellSignalR 260 CoreGx 369 HIPPO 51 glmGamPoi 4404 distinct 264 TADCompare 84 SPsimSeq 184 DegNorm 59 Rtpca 67 scDataviz 82 RegEnrich 107 Nebulosa 1091 BiocIO 19983 zellkonverter 1238 idpr 69 ISAnalytics 60 pageRank 57 proActiv 69 rsemmed 48 MSPrep 161 ChromSCape 67 MSstatsTMTPTM 5 biocthis 248 GSgalgoR 53 NanoMethViz 87 ncRNAtools 54 NewWave 122 SpatialDecon 197 marr 56 MSstatsConvert 467 megadepth 127 MSEADbi 5 ADImpute 75 VERSO 51 famat 62 graphat 1 flowGraph 53 RLassoCox 60 dichromat 3 magrittr 20 sendmailR 2 KEGG.db 1 PFP 11 stats 1 datasets 1 grid 1 biobtreeR 53 easyreporting 57 EnMCB 63 scMAGeCK 8 reconsi 54 netDx 47 struct 154 clustifyr 148 SCOPE 67 org.Hs.eg.db 15 GeneTonic 315 TreeAndLeaf 137 exomePeak2 93 sarks 49 pga 0 hicbricks 0 TAPseq 66 rrvgo 524 cmapR 405 EpiTxDb 84 NoRCE 55 GCSConnection 6 PloGO2 59 CiteFuse 88 scClassify 79 MatrixGenerics 39945 scHOT 67 SynExtend 59 optimalFlow 64 snapcount 61 BRGenomics 131 rstudio 1 GenomeInfoDbData 20 string 1 sangeranalyseR 185 BrainSABER 10 flowCut 108 HCAMatrixBrowser 3 ToxicoGx 70 corral 81 fmrs 124 CytoTree 15 scCB2 59 pipeComp 59 MesKit 78 ggtreeExtra 1050 ILoReg 47 Omixer 58 HPAStainR 11 VplotR 60 Spectra 1932 ResidualMatrix 3630 MethReg 68 PhosR 116 preciseTAD 65 SeqGate 55 periodicDNA 51 GCSFilesystem 7 BayesSpace 241 MSstatsPTM 202 systemPipeShiny 67 customCMPdb 70 AnVILPublish 63 microbiomeExplorer 84 musicatk 87 MOGAMUN 55 SCFA 48 tidySummarizedExperiment 366 moanin 175 degraph 1 VarCon 49 ReactomeContentService4R 118 GenomicDistributions 103 labeling 160 geneLenDataBase 10 hgu133plus2.db 8 GO.db 15 Homo.sapiens 6 splines 1 stats4 1 tools 1 utils 1 methods 1 compiler 1 dearseq 210 BgeeCall 50 SimFFPE 50 DIAlignR 57 structToolbox 113 DAMEfinder 63 basilisk.utils 3890 ctgGEM 7 omicsmarker 0 prostar 0 rlang 453 scTHI 49 eisaR 116 cytomapper 330 ROSeq 58 methylSig 80 GGPA 50 rfaRm 48 rhdf5filters 19397 dpeak 21 RNAAgeCalc 75 peco 52 spqn 51 TBSignatureProfiler 72 weitrix 57 sparseMatrixStats 15611 combi 91 metaseqR2 71 AnVIL 566 CARNIVAL 146 base 1 multicrispr 63 PeacoQC 236 simplifyEnrichment 826 RadioGx 67 multiGSEA 141 MouseFM 155 wpm 61 escape 421 MultiBaC 76 SpatialExperiment 2662 UTAR 0 transomics2cytoscape 63 uncoverappLib 63 QFeatures 2033 simpleSingleCell 0 UMI4Cats 64 hummingbird 49 RIPAT 26 Rfastp 146 metabolomicsWorkbenchR 85 FScanR 21 SCATE 68 FilterFFPE 62 ANCOMBC 1242 facets 0 tomoda 54 aggregateBioVar 75 dasper 13 bambu 281 densvis 2419 GWAS.BAYES 60 tidySingleCellExperiment 217 AnVILBilling 54 CellaRepertorium 45 ExperimentSubset 73 sigpathway 1 AlpsNMR 70 CNVgears 31 mina 47 bnem 65 ttgsea 88 SplicingFactory 47 BumpyMatrix 556 mumosa 73 brew 65 RColorBrewer 16 PoDCall 49 parallel 1 tcltk 1 grDevices 1 calib 0 NPARC 73 CeTF 86 pmp 118 rSWeeP 54 basilisk 4228 MEAT 52 ga4ghclient 0 cindex 0 MicrobiotaProcess 526 gmoviz 57 GPA 54 OpenStats 50 randRotation 46 iSEEu 114 ExploreModelMatrix 170 MOMA 60 regutools 80 timeOmics 86 LACE 163 cBioPortalData 436 scuttle 9816 getDEE2 53 GWENA 238 GSEAmining 69 padma 58 bluster 5373 infinityFlow 79 rebook 141 snifter 137 POMA 132 TileDBArray 62 msImpute 167 TimiRGeN 51 nearBynding 54 velociraptor 135 recountmethylation 76 rnaEditr 62 spatialHeatmap 213 scp 175 scRepertoire 428 lefser 570 MOFA2 487 recount3 300 metabCombiner 73 Informeasure 44 Herper 148 cfDNAPro 75 metapod 4889 shinyepico 71 censcyt 60 GEOfastq 81 nempi 62 affio 0 bitops 31 PFAM.db 12 TxDb.Hsapiens.UCSC.hg19.knownGene 6 CAEN 48 BSgenome.Hsapiens.UCSC.hg38 12 graphics 1 RiboDiPA 55 SOMNiBUS 61 OSCA.basic 19 mulcom 1 autonomics 57 lisaClust 139 PhIPData 102 mia 1517 barcodetrackR 58 sechm 158 drugTargetInteractions 62 DelayedRandomArray 92 interacCircos 64 awst 54 POWSC 65 diffUTR 58 Rbec 61 systemPipeTools 61 HubPub 117 RCSL 47 ReactomeGraph4R 49 cosmosR 76 csawBook 4 scShapes 48 cageminer 65 VAExprs 50 veloviz 52 ggspavis 171 genomicInstability 60 svaRetro 62 scAnnotatR 178 rGenomeTracks 51 imcRtools 226 MicrobiomeProfiler 123 cliProfiler 53 ODER 9 Cepo 199 epistack 54 deconvR 70 mosbi 50 TargetDecoy 61 biodbLipidmaps 42 rprimer 78 ggmanh 197 coMethDMR 68 BOBaFIT 61 crisprBase 163 CNVMetrics 55 IlluminaHumanMethylation450kmanifest 6 VGAM 16 ichorCNA 0 ebimage 1 ramr 49 SCArray 86 planet 199 GeomxTools 413 fobitools 62 Travel 4 PhenoGeneRanker 43 MsBackendMassbank 81 dce 71 hca 64 miQC 111 OSCA.advanced 16 OSCA 5 dir.expiry 3899 condiments 95 memes 212 wppi 44 CytoGLMM 98 MungeSumstats 1080 cyanoFilter 56 treekoR 60 cbpManager 56 MQmetrics 35 KBoost 45 decoupleR 1059 XNAString 54 BloodGen3Module 155 HGC 68 MSstatsLOBD 59 vissE 100 DelayedTensor 53 m6Aboost 47 FindIT2 58 FLAMES 79 scanMiR 91 iPath 45 mitoClone2 77 GEOexplorer 65 BentoBox 0 methylclock 153 spatialDE 108 BioPlex 5 traviz 61 ProteoDisco 57 sparrow 208 MsBackendRawFileReader 66 biodbUniprot 53 pairkat 78 scTreeViz 54 synapsis 45 biodbKegg 71 NxtIRFcore 11 GeoDiff 76 pengls 44 hermes 148 netZooR 65 GBScleanR 75 ScaledMatrix 12301 VaSP 62 TraRe 7 MetaboCoreUtils 1757 MsFeatures 1697 MAGAR 167 IRISFGM 72 satuRn 276 InterCellar 76 PDATK 136 ModCon 47 miaViz 247 SingleRBook 2 ComPrAn 56 sitadela 52 airpart 68 LRcell 52 ptairMS 52 DeepPINCS 84 ppcseq 58 OSCA.multisample 19 biodb 191 tLOH 50 granulator 121 immunotation 54 miloR 297 epialleleR 62 mistyR 90 csdR 49 BindingSiteFinder 63 MAI 61 rmspc 65 plotgardener 324 bugsigdbr 161 tanggle 66 atena 113 tripr 52 monaLisa 149 HPiP 55 biodbChebi 88 cytoKernel 65 Cogito 50 microbiomeMarker 397 scReClassify 64 miaSim 88 easier 139 TRESS 98 CellBarcode 69 mfuzz 0 targetsearch 0 bayespeak 0 CONSTANd 52 scClassifR 4 InteractiveComplexHeatmap 411 NanoStringNCTools 405 ORFhunteR 55 MACSr 111 TrajectoryUtils 1960 Summix 50 HiCDCPlus 87 TrajectoryGeometry 45 MsBackendMgf 448 CelliD 243 OSCA.intro 54 OSCA.workflows 33 midasHLA 57 geva 50 BioNERO 308 CIMICE 55 fedup 53 conclus 7 methylscaper 83 epidecodeR 51 CNViz 59 FEAST 117 quantiseqr 459 mirTarRnaSeq 68 tricycle 242 cellmigRation 51 fgga 53 DExMA 66 multiSight 64 supersigs 99 MatrixQCvis 171 SingleMoleculeFootprinting 63 epigraHMM 65 msqrob2 152 GenomicSuperSignature 67 rawrr 216 spiky 48 BUSseq 58 segmenter 68 NanoTube 84 dStruct 51 Dino 60 NeuCA 40 svaNUMT 63 spatzie 49 enhancerHomologSearch 58 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